Inference for Spatiotemporal Partially Observed Markov Processes


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Documentation for package ‘spatPomp’ version 0.29.0.0

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spatPomp-package Inference for SpatPOMPs (Spatiotemporal Partially Observed Markov Processes)
abf Adapted Bagged Filter (ABF)
abf-abfd_spatPomp Adapted Bagged Filter (ABF)
abf-method Adapted Bagged Filter (ABF)
abf-spatPomp Adapted Bagged Filter (ABF)
abfir Adapted Bagged Filter with Intermediate Resampling (ABF-IR)
abfir-abfird_spatPomp Adapted Bagged Filter with Intermediate Resampling (ABF-IR)
abfir-method Adapted Bagged Filter with Intermediate Resampling (ABF-IR)
abfir-spatPomp Adapted Bagged Filter with Intermediate Resampling (ABF-IR)
as.data.frame Coerce to data frame
as.data.frame.spatPomp Coerce to data frame
as_spatPomp Coerce to spatPomp
bm Brownian motion spatPomp simulator
bpfilter Block particle filter (BPF)
bpfilter-method Block particle filter (BPF)
bpfilter-spatPomp Block particle filter (BPF)
city_data_UK City data in the United Kingdom
coerce-method Coerce to data frame
coerce-method Coerce to spatPomp
coerce-pomp-spatPomp Coerce to spatPomp
dunit_measure dunit_measure 'dunit_measure' evaluates the unit measurement density of a unit's observation given the entire state
dunit_measure-method dunit_measure 'dunit_measure' evaluates the unit measurement density of a unit's observation given the entire state
dunit_measure-spatPomp dunit_measure 'dunit_measure' evaluates the unit measurement density of a unit's observation given the entire state
enkf Generalized Ensemble Kalman filter (EnKF)
enkf-method Generalized Ensemble Kalman filter (EnKF)
enkf-spatPomp Generalized Ensemble Kalman filter (EnKF)
eunit_measure eunit_measure
eunit_measure-method eunit_measure
eunit_measure-spatPomp eunit_measure
gbm Geometric Brownian motion spatPomp simulator
girf Guided intermediate resampling filter (GIRF)
girf-ANY Guided intermediate resampling filter (GIRF)
girf-girfd_spatPomp Guided intermediate resampling filter (GIRF)
girf-method Guided intermediate resampling filter (GIRF)
girf-missing Guided intermediate resampling filter (GIRF)
girf-spatPomp Guided intermediate resampling filter (GIRF)
ienkf Iterated ensemble Kalman filter (IEnKF)
ienkf-method Iterated ensemble Kalman filter (IEnKF)
ienkf-spatPomp Iterated ensemble Kalman filter (IEnKF)
igirf Iterated guided intermediate resampling filter (IGIRF)
igirf-ANY Iterated guided intermediate resampling filter (IGIRF)
igirf-igirfd_spatPomp Iterated guided intermediate resampling filter (IGIRF)
igirf-method Iterated guided intermediate resampling filter (IGIRF)
igirf-missing Iterated guided intermediate resampling filter (IGIRF)
igirf-spatPomp Iterated guided intermediate resampling filter (IGIRF)
iubf Iterated Unadapted Bagged Filter (IUBF)
iubf-method Iterated Unadapted Bagged Filter (IUBF)
iubf-spatPomp Iterated Unadapted Bagged Filter (IUBF)
logLik Log likelihood
logLik-abfd_spatPomp Log likelihood
logLik-abfird_spatPomp Log likelihood
logLik-bpfilterd_spatPomp Log likelihood
logLik-girfd_spatPomp Log likelihood
logLik-igirfd_spatPomp Log likelihood
logLik-iubfd_spatPomp Log likelihood
logLik-method Log likelihood
lorenz Lorenz '96 spatPomp simulator
mcap Monte Carlo adjusted profile
measles Measles in UK spatPomp generator
measlesUK Measles in the United Kingdom
munit_measure munit_measure
munit_measure-method munit_measure
munit_measure-spatPomp munit_measure
plot Plotting 'spatPomp' data
plot-igirfd_spatPomp Plotting 'spatPomp' data
plot-method Plotting 'spatPomp' data
plot-spatPomp Plotting 'spatPomp' data
print Print methods
print-method Print methods
print-spatPomp Print methods
runit_measure runit_measure
runit_measure-method runit_measure
runit_measure-spatPomp runit_measure
simulate Simulation of a spatiotemporal partially-observed Markov process
simulate-method Simulation of a spatiotemporal partially-observed Markov process
simulate-spatPomp Simulation of a spatiotemporal partially-observed Markov process
spatPomp Constructor of the spatPomp object
spatPomp-class An S4 class to represent a spatiotemporal POMP model and data.
spatPomp_Csnippet C snippets
spatPomp_Csnippet-character C snippets
spatPomp_Csnippet-method C snippets
unit_names Unit names of a spatiotemporal model
unit_names-method Unit names of a spatiotemporal model
unit_names-spatPomp Unit names of a spatiotemporal model
vec_dmeasure Vector of measurement densities
vec_dmeasure-method Vector of measurement densities
vec_dmeasure-spatPomp Vector of measurement densities
vec_rmeasure Vector of simulated measurements
vec_rmeasure-method Vector of simulated measurements
vec_rmeasure-spatPomp Vector of simulated measurements
vunit_measure vunit_measure
vunit_measure-method vunit_measure
vunit_measure-spatPomp vunit_measure