Make 'PICRUSt2' Output Analysis and Visualization Easier


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Documentation for package ‘ggpicrust2’ version 1.6.0

Help Pages

ggpicrust2 This function integrates pathway name/description annotations, ten of the most advanced differential abundance (DA) methods, and visualization of DA results.
ko2kegg_abundance Convert KO abundance in picrust2 export files to KEGG pathway abundance
pathway_annotation Pathway information annotation of "EC", "KO", "MetaCyc" pathway
pathway_daa Predictional functional patwhay differential abundance (DA)
pathway_errorbar The function pathway_errorbar() is used to visualize the results of functional pathway differential abundance analysis as error bar plots.
pathway_heatmap Create pathway heatmap
pathway_pca Perform Principal Component Analysis (PCA) on functional pathway abundance data and create visualizations of the PCA results.