Last updated on 2025-05-21 05:51:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.4 | 4.64 | 541.70 | 546.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.4 | 3.18 | 405.77 | 408.95 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.4 | 665.02 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.4 | 703.71 | ERROR | |||
| r-devel-windows-x86_64 | 0.1.4 | 6.00 | 299.00 | 305.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.4 | 4.17 | 528.73 | 532.90 | OK | |
| r-release-linux-x86_64 | 0.1.4 | 4.71 | 532.34 | 537.05 | OK | |
| r-release-macos-arm64 | 0.1.4 | 431.00 | OK | |||
| r-release-macos-x86_64 | 0.1.4 | 260.00 | OK | |||
| r-release-windows-x86_64 | 0.1.4 | 6.00 | 303.00 | 309.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.4 | 385.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.4 | 262.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.4 | 8.00 | 413.00 | 421.00 | OK |
Version: 0.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a01_DatabaseDiagnostics.Rmd’
--- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from a02_CodelistDiagnostics.Rmd:78-83 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
Names must be unique.
✖ These names are duplicated:
* "codelist_type" at locations 4 and 5.
--- failed re-building ‘a02_CodelistDiagnostics.Rmd’
--- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PhenotypeR.Rcheck/vign_test/PhenotypeR/vignettes/a03_CohortDiagnostics_files/figure-html/unnamed-chunk-5-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26097 bytes
Input file size = 26211 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20271
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20271
Output IDAT size = 20271 bytes (5826 bytes decrease)
Output file size = 20349 bytes (5862 bytes = 22.36% decrease)
--- finished re-building ‘a03_CohortDiagnostics.Rmd’
--- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a04_MatchedDiagnostics.Rmd’
--- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a05_PopulationDiagnostics.Rmd’
SUMMARY: processing the following file failed:
‘a02_CodelistDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a01_DatabaseDiagnostics.Rmd’
--- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from a02_CodelistDiagnostics.Rmd:78-83 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
Names must be unique.
✖ These names are duplicated:
* "codelist_type" at locations 4 and 5.
--- failed re-building ‘a02_CodelistDiagnostics.Rmd’
--- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a03_CohortDiagnostics.Rmd’
--- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a04_MatchedDiagnostics.Rmd’
--- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a05_PopulationDiagnostics.Rmd’
SUMMARY: processing the following file failed:
‘a02_CodelistDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64