Last updated on 2025-05-21 05:52:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 70.47 | 35.88 | 106.35 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 47.55 | 26.49 | 74.04 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 202.64 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 208.46 | NOTE | |||
| r-devel-windows-x86_64 | 1.1.4 | 77.00 | 86.00 | 163.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.4 | 71.23 | 33.94 | 105.17 | NOTE | |
| r-release-linux-x86_64 | 1.1.4 | 68.16 | 33.79 | 101.95 | NOTE | |
| r-release-macos-arm64 | 1.1.4 | 61.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1.4 | 79.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1.4 | 73.00 | 85.00 | 158.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.4 | 53.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.4 | 60.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.4 | 86.00 | 95.00 | 181.00 | NOTE |
Version: 1.1.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Matthew Gould <mgould@sfu.ca>’
The Description field contains
<arXiv:1904.03332>). The core method converts rooted unlabeled phylo
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.4
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(treenomial)
>
> test_check("treenomial")
*** caught segfault ***
address 0x568cf37e88c0, cause 'memory not mapped'
Traceback:
1: coeffMatList(wedgeSeq, y = 0, type = type, tipLabA = uniqueTipLabFirst[[1]], tipLabB = uniqueTipLabFirst[[2]], nThreads = numThreads)
2: treeToPoly(differentSizeTrees, type = "tipLabel", numThreads = 0)
3: eval(code, test_env)
4: eval(code, test_env)
5: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
6: doTryCatch(return(expr), name, parentenv, handler)
7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
13: test_code(desc, code, env = parent.frame(), reporter = reporter)
14: test_that("test different size trees with binary trait labels", { largerTree <- rtree(30) largerTree$tip.label <- sample(c("t1", "t2"), size = 30, replace = TRUE) smallerTree <- rtree(2) coeffs <- treeToPoly(c(largerTree, smallerTree), type = "tipLabel", numThreads = 0) coeffs <- alignPoly(coeffs) firstDims <- dim(coeffs[[1]]) res <- lapply(coeffs, function(i) dim(i) == firstDims) expect_condition(all(res)) largerTrees <- rmtree(10, 10) largerTrees <- lapply(largerTrees, function(i) { i$tip.label <- sample(c("t1", "t2"), size = 10, replace = TRUE) return(i) }) differentSizeTrees <- c(largerTrees, list(rtree(2))) coeffs <- treeToPoly(differentSizeTrees, type = "tipLabel", numThreads = 0) coeffs <- alignPoly(coeffs) firstDims <- dim(coeffs[[1]]) res <- lapply(coeffs, function(i) dim(i) == firstDims) expect_condition(all(res)) largerTrees <- rmtree(10, 10) largerTrees <- lapply(largerTrees, function(i) { i$tip.label <- sample(c("t1", "t2"), size = 10, replace = TRUE) return(i) }) smallerTrees <- rmtree(50, 5) smallerTrees <- lapply(smallerTrees, function(i) { i$tip.label <- sample(c("t1", "t2"), size = 5, replace = TRUE) return(i) }) differentSizeTrees <- c(largerTrees, smallerTrees) coeffs <- treeToPoly(differentSizeTrees, type = "tipLabel", numThreads = 0) coeffs <- alignPoly(coeffs) firstDims <- dim(coeffs[[1]]) res <- lapply(coeffs, function(i) dim(i) == firstDims) expect_condition(all(res)) })
15: eval(code, test_env)
16: eval(code, test_env)
17: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
18: doTryCatch(return(expr), name, parentenv, handler)
19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
20: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
21: doTryCatch(return(expr), name, parentenv, handler)
22: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
23: tryCatchList(expr, classes, parentenv, handlers)
24: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
25: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
26: source_file(path, env = env(env), desc = desc, error_call = error_call)
27: FUN(X[[i]], ...)
28: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
29: doTryCatch(return(expr), name, parentenv, handler)
30: tryCatchOne(expr, names, parentenv, handlers[[1L]])
31: tryCatchList(expr, classes, parentenv, handlers)
32: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
33: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
34: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
35: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
36: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
37: test_check("treenomial")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.4
Check: installed package size
Result: NOTE
installed size is 10.3Mb
sub-directories of 1Mb or more:
libs 10.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64