check_input             Check pipeline input data for required format
combined_graphs_example
                        Combined graphs
compute_correlation_matrices
                        Computes correlation matrices for specified
                        network layers
compute_drug_response_scores
                        Calculate drug response score
correlation_matrices_example
                        Correlation matrices
determine_drug_targets
                        Determine drug target nodes in network
differential_graph_example
                        Differential graph
drdimont_settings       Create global settings variable for DrDimont
                        pipeline
drug_gene_interactions
                        Drug-gene interactions
drug_response_scores_example
                        Drug response score
drug_target_edges_example
                        Drug target nodes in combined network
generate_combined_graphs
                        Combines individual layers to a single graph
generate_differential_score_graph
                        Compute difference of interaction score of two
                        groups
generate_individual_graphs
                        Builds graphs from specified network layers
generate_interaction_score_graphs
                        Computes interaction score for combined graphs
individual_graphs_example
                        Individual graphs
install_python_dependencies
                        Installs python dependencies needed for
                        interaction score computation
interaction_score_graphs_example
                        Interaction score graphs
layers_example          Formatted layers object
make_connection         Specify connection between two individual
                        layers
make_drug_target        Reformat drug-target-interaction data
make_layer              Creates individual molecular layers from raw
                        data and unique identifiers
metabolite_data         Metabolomics data
metabolite_protein_interactions
                        Metabolite protein interaction data
mrna_data               mRNA expression data
phosphosite_data        Phosphosite data
protein_data            Protein data
return_errors           Return detected errors in the input data
run_pipeline            Execute all DrDimont pipeline steps
                        sequentially
