Automated and Controlled Extraction, Cleaning, and Processing of
Occurrence Data for Generating Biogeographic Ranges of Marine
Organisms
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Documentation for package ‘EcoCleanR’ version 1.0.1
Help Pages
| decimal_places | Get Decimal Places of Coordinate Values |
| distance_calc | Calculate geographic distance and mahalanobis distance to estimate outlier probability of a data point |
| ecodata | dataset1: Documentation of data file - ecodata.rda |
| ecodata_cleaned | dataset4: Documentation of data file - ecodata_cleaned.rda |
| ecodata_corrected | dataset2: Documentation of data file - ecodata_corrected.rda |
| ecodata_with_outliers | dataset3: Documentation of data file - ecodata_with_outliers.rda |
| ecodata_x | dataset5: Documentation of data file - ecodata_x.rda |
| ec_db_merge | Merge the Data sets Extracted from Various datasources. |
| ec_extract_env_layers | Extract the Environmental data |
| ec_filter_by_uncertainty | Flag the Occurrences those has Extreme Uncertainty Error Radius |
| ec_flag_non_east_atlantic | Flag the occurrences those are not in east Atlantic and are inland |
| ec_flag_non_east_pacific | Flag occurrences those are not in east Pacific and are inland |
| ec_flag_non_region | Flag Occurrences those are in wrong ocean basins and are inland |
| ec_flag_non_west_atlantic | Flag Occurrences those are not in west Atlantic and are inland |
| ec_flag_non_west_pacific | Flag occurrences those are not in east Pacific and are inland |
| ec_flag_outlier | Flag Outlier Occurrences - using Spatial and Non-spatial Attributes |
| ec_flag_precision | Flag occurrences those has bad precision |
| ec_flag_with_locality | Filter records to georeference using GEOLocate |
| ec_geographic_map | Map view of occurrence data points |
| ec_geographic_map_w_flag | Map view to visualize data points with outlier probability 0 to 1 on a map view |
| ec_impute_env_values | Impute Environmental Variables using Mean Values of occurrences within a certain radius |
| ec_merge_corrected_coordinates | Merge the Update Georeferenced Occurrence Points back to the Main Data File. |
| ec_plot_distance | Scatter Plot between geo_distance vs maha_distance with geo- and maha- Quantile Threshold to Demonstrate the Outliers outside those threshold. |
| ec_plot_var_range | Plot cleaned data overlay overall occurrence data to demonstrate accepted ranges of spatial and non-spatial attributes |
| ec_rm_duplicate | Remove Duplicate Records from the Merged Data |
| ec_trail_zero | Trail Zeros from the Coordinate Values |
| ec_var_summary | A Summary Table of Final Cleaned Spatial and Environmental Variables |
| ec_worms_synonym | Check Accepted Synonyms from WoRMs Taxonomy |
| example_sp_invertebase | dataset6: Documentation of data file - example_sp_invertebase.rda |
| haversine_kmeans | Calculate Harversine distance |