# Inferring Chromatin Interaction Modules from 3C-Based Data

## Documentation for package ‘HiCociety’ version 0.1.39

- DESCRIPTION file.

## Help Pages

add_Genes | Add gene information
calculate_avg_count | Calculate Average Count within 5-pixel Padding
check_package | Check if a package is installed
ConnectivityDiff | Connectivity difference between two conditions
getContactFrequency | Get contact Frequency
getContactProbability | Contact probability
getElbowPoint | Estimation of elbow point from J-shaped-curve
get_all_chr_names | Retrieve chromosome names from .hic file
get_example_hic_file | Example download
get_txdb | All available Txdb
hic2community | Create module objects from the Hi-C data
hic2network | HiC to network data format
visualizeModule | Visualization of module