Last updated on 2025-12-07 04:49:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 9.80 | 529.43 | 539.23 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 6.55 | 300.19 | 306.74 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 42.00 | 731.09 | 773.09 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 22.00 | 872.37 | 894.37 | NOTE | |
| r-devel-windows-x86_64 | 0.4.0 | 11.00 | 748.00 | 759.00 | OK | |
| r-patched-linux-x86_64 | 0.4.0 | 10.17 | 563.48 | 573.65 | OK | |
| r-release-linux-x86_64 | 0.4.0 | 8.22 | 563.73 | 571.95 | OK | |
| r-release-macos-arm64 | 0.4.0 | OK | ||||
| r-release-macos-x86_64 | 0.4.0 | 9.00 | 627.00 | 636.00 | OK | |
| r-release-windows-x86_64 | 0.4.0 | 11.00 | 769.00 | 780.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.4.0 | 9.00 | 488.00 | 497.00 | OK | |
| r-oldrel-windows-x86_64 | 0.4.0 | 16.00 | 628.00 | 644.00 | OK |
Version: 0.4.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'covr', 'rstanarm'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [241s/300s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BayesPostEst)
>
> test_check("BayesPostEst")
Loading required package: rjags
Loading required package: coda
Linked to JAGS 4.3.2
Loaded modules: basemod,bugs
Attaching package: 'R2jags'
The following object is masked from 'package:coda':
traceplot
Loading required package: Rcpp
Loading 'brms' package (version 2.23.0). Useful instructions
can be found by typing help('brms'). A more detailed introduction
to the package is available through vignette('brms_overview').
Attaching package: 'brms'
The following object is masked from 'package:stats':
ar
Compiling Stan program...
Start sampling
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.191 seconds (Warm-up)
Chain 1: 0.095 seconds (Sampling)
Chain 1: 0.286 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.1e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.152 seconds (Warm-up)
Chain 2: 0.149 seconds (Sampling)
Chain 2: 0.301 seconds (Total)
Chain 2:
module glm loaded
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 500
Unobserved stochastic nodes: 5
Total graph size: 3509
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 500
Unobserved stochastic nodes: 5
Total graph size: 3015
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 500
Unobserved stochastic nodes: 3
Total graph size: 3506
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 500
Unobserved stochastic nodes: 3
Total graph size: 3506
Initializing model
##
## Markov Chain Monte Carlo Package (MCMCpack)
## Copyright (C) 2003-2025 Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
##
## Support provided by the U.S. National Science Foundation
## (Grants SES-0350646 and SES-0350613)
##
Attaching package: 'MCMCpack'
The following objects are masked from 'package:brms':
ddirichlet, rdirichlet
Loading required package: StanHeaders
rstan version 2.32.7 (Stan version 2.32.2)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions,
change `threads_per_chain` option:
rstan_options(threads_per_chain = 1)
Attaching package: 'rstan'
The following object is masked from 'package:runjags':
extract
The following object is masked from 'package:R2jags':
traceplot
The following object is masked from 'package:coda':
traceplot
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000519 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 5.19 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.214 seconds (Warm-up)
Chain 1: 1.06 seconds (Sampling)
Chain 1: 2.274 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000179 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.79 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 1.186 seconds (Warm-up)
Chain 2: 1.281 seconds (Sampling)
Chain 2: 2.467 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000183 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 1.83 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 1.215 seconds (Warm-up)
Chain 3: 1.114 seconds (Sampling)
Chain 3: 2.329 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000222 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 2.22 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 1.387 seconds (Warm-up)
Chain 4: 1.027 seconds (Sampling)
Chain 4: 2.414 seconds (Total)
Chain 4:
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error in `library()`:
! there is no package called 'rstanarm'
Backtrace:
▆
1. ├─testthat::test_check("BayesPostEst")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─base::lapply(r_scripts, source) at ./setup.R:24:1
15. │ └─base (local) FUN(X[[i]], ...)
16. │ ├─base::withVisible(eval(ei, envir))
17. │ └─base::eval(ei, envir)
18. │ └─base::eval(ei, envir)
19. ├─base::library(rstanarm)
20. │ └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
21. └─testthat (local) `<fn>`(`<pckgNtFE>`)
22. └─cli::cli_abort(...)
23. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘HDInterval’ ‘carData’ ‘rjags’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc