Last updated on 2025-02-22 04:51:22 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 6.97 | 426.10 | 433.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 4.65 | 299.09 | 303.74 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 744.42 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 613.38 | ERROR | |||
| r-devel-macos-arm64 | 0.2.2 | 109.00 | OK | |||
| r-devel-macos-x86_64 | 0.2.2 | 389.00 | OK | |||
| r-devel-windows-x86_64 | 0.2.2 | 8.00 | 360.00 | 368.00 | OK | |
| r-patched-linux-x86_64 | 0.2.2 | 5.78 | 405.36 | 411.14 | OK | |
| r-release-linux-x86_64 | 0.2.2 | 6.69 | 401.88 | 408.57 | OK | |
| r-release-macos-arm64 | 0.2.2 | 181.00 | OK | |||
| r-release-macos-x86_64 | 0.2.2 | 364.00 | OK | |||
| r-release-windows-x86_64 | 0.2.2 | 8.00 | 345.00 | 353.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | 153.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.2 | 323.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.2 | 10.00 | 464.00 | 474.00 | OK |
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘A-summarise_clinical_tables_records.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-9-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 56502 bytes
Input file size = 57432 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50304
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 50136
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 50136
Output IDAT size = 50136 bytes (6366 bytes decrease)
Output file size = 50214 bytes (7218 bytes = 12.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-10-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 82012 bytes
Input file size = 82990 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73229
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 68729
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 67516
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 67516
Output IDAT size = 67516 bytes (14496 bytes decrease)
Output file size = 67594 bytes (15396 bytes = 18.55% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-11-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 69353 bytes
Input file size = 70307 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 61134
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 61134
Output IDAT size = 61134 bytes (8219 bytes decrease)
Output file size = 61212 bytes (9095 bytes = 12.94% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-13-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 269390 bytes
Input file size = 269852 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 219451
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 219451
Output IDAT size = 219451 bytes (49939 bytes decrease)
Output file size = 219529 bytes (50323 bytes = 18.65% decrease)
--- finished re-building ‘A-summarise_clinical_tables_records.Rmd’
--- re-building ‘B-summarise_concept_set_counts.Rmd’ using rmarkdown
Quitting from lines 17-26 [unnamed-chunk-1] (B-summarise_concept_set_counts.Rmd)
Error: processing vignette 'B-summarise_concept_set_counts.Rmd' failed with diagnostics:
could not find function "eunomia_is_available"
--- failed re-building ‘B-summarise_concept_set_counts.Rmd’
--- re-building ‘C-summarise_observation_period.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-7-1.png
1344x960 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15443 bytes
Input file size = 16310 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11852
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11816
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10566
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10475
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10475
Output IDAT size = 10475 bytes (4968 bytes decrease)
Output file size = 10553 bytes (5757 bytes = 35.30% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-8-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18157 bytes
Input file size = 19039 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14339
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11642
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11536
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11536
Output IDAT size = 11536 bytes (6621 bytes decrease)
Output file size = 11614 bytes (7425 bytes = 39.00% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-8-2.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39648 bytes
Input file size = 39774 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34672
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34672
Output IDAT size = 34672 bytes (4976 bytes decrease)
Output file size = 34750 bytes (5024 bytes = 12.63% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-13-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 41772 bytes
Input file size = 42690 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36493
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 35955
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 35955
Output IDAT size = 35955 bytes (5817 bytes decrease)
Output file size = 36033 bytes (6657 bytes = 15.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-14-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 185866 bytes
Input file size = 186208 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 144562
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 144562
Output IDAT size = 144562 bytes (41304 bytes decrease)
Output file size = 144640 bytes (41568 bytes = 22.32% decrease)
--- finished re-building ‘C-summarise_observation_period.Rmd’
SUMMARY: processing the following file failed:
‘B-summarise_concept_set_counts.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc