Last updated on 2024-07-23 05:57:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 39.75 | 128.98 | 168.73 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 25.67 | 98.31 | 123.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 232.25 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 205.81 | OK | |||
| r-devel-windows-x86_64 | 1.0 | 36.00 | 159.00 | 195.00 | OK | |
| r-patched-linux-x86_64 | 1.0 | 40.47 | 118.60 | 159.07 | OK | |
| r-release-linux-x86_64 | 1.0 | 38.35 | 118.25 | 156.60 | OK | |
| r-release-macos-arm64 | 1.0 | 60.00 | OK | |||
| r-release-macos-x86_64 | 1.0 | 106.00 | OK | |||
| r-release-windows-x86_64 | 1.0 | 39.00 | 159.00 | 198.00 | OK | |
| r-oldrel-macos-arm64 | 1.0 | 72.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0 | 108.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0 | 43.00 | 160.00 | 203.00 | ERROR |
Version: 1.0
Check: examples
Result: ERROR
Running examples in 'bayesCureRateModel-Ex.R' failed
The error most likely occurred in:
> ### Name: bayesCureRateModel-package
> ### Title: Bayesian Cure Rate Modeling for Time-to-Event Data
> ### Aliases: bayesCureRateModel-package bayesCureRateModel
> ### Keywords: package
>
> ### ** Examples
>
> # TOY EXAMPLE (very small numbers... only for CRAN check purposes)
> # simulate toy data
> set.seed(1)
> n = 4
> stat = rbinom(n, size = 1, prob = 0.5)
> x <- cbind(1, matrix(rnorm(n), n, 1))
> y <- rexp(n)
> # run a weibull model with default prior setup
> # considering 2 heated chains
> fit1 <- cure_rate_MC3(y = y, X = x, Censoring_status = stat,
+ promotion_time = list(distribution = 'weibull'),
+ nChains = 2,
+ nCores = 1,
+ mcmc_cycles = 3, sweep=2)
> # print method
> fit1
* Run information:
Fitted model: `weibull'
BIC: 72.813
MCMC cycles: 3
Number of parallel heated chains: 2
Swap rates of adjacent chains:
Min. Median Max.
1 1 1
* Maximum A Posteriori (MAP) estimate of parameters
MAP estimate
g_mcmc 2.3516764
lambda_mcmc 3.8770386
a1_mcmc 0.2955287
a2_mcmc 1.1932600
b0_mcmc [] -0.3071637
b1_mcmc [] 2.7175316
> # summary method
> summary1 <- summary(fit1)
By default, I will discard the first one third of the mcmc sample as burn-in period.
Alternatively, you may set the "burn" parameter to another value.
Error in mvnX(data = data, prior = prior) :
NA/NaN/Inf in foreign function call (arg 1)
Calls: summary ... eval -> eval -> mclustBIC -> mvn -> eval -> eval -> mvnX
Execution halted
Flavor: r-oldrel-windows-x86_64