Last updated on 2025-02-22 04:51:06 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.11 | 10.72 | 146.35 | 157.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.11 | 7.73 | 102.54 | 110.27 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.11 | 227.11 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.11 | 236.99 | ERROR | |||
| r-devel-macos-arm64 | 2.11 | 95.00 | OK | |||
| r-devel-macos-x86_64 | 2.11 | 167.00 | OK | |||
| r-devel-windows-x86_64 | 2.11 | 13.00 | 158.00 | 171.00 | OK | |
| r-patched-linux-x86_64 | 2.11 | 10.39 | 140.63 | 151.02 | OK | |
| r-release-linux-x86_64 | 2.11 | 9.66 | 140.11 | 149.77 | OK | |
| r-release-macos-arm64 | 2.11 | 92.00 | OK | |||
| r-release-macos-x86_64 | 2.11 | 213.00 | OK | |||
| r-release-windows-x86_64 | 2.11 | 13.00 | 152.00 | 165.00 | OK | |
| r-oldrel-macos-arm64 | 2.11 | 87.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.11 | 197.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.11 | 15.00 | 193.00 | 208.00 | OK |
Version: 2.11
Check: examples
Result: ERROR
Running examples in ‘buildmer-Ex.R’ failed
The error most likely occurred in:
> ### Name: buildmer
> ### Title: Use 'buildmer' to fit mixed-effects models using 'lmer'/'glmer'
> ### from 'lme4'
> ### Aliases: buildmer
>
> ### ** Examples
>
> library(buildmer)
> model <- buildmer(Reaction ~ Days + (Days|Subject),lme4::sleepstudy)
Determining predictor order
Fitting via lm: Reaction ~ 1
Currently evaluating LRT for: Days
Fitting via lm: Reaction ~ 1 + Days
Updating formula: Reaction ~ 1 + Days
Fitting via gam, with REML: Reaction ~ 1 + Days
Currently evaluating LRT for: 1 | Subject
Fitting via lmer, with REML: Reaction ~ 1 + Days + (1 | Subject)
Ending the ordering procedure due to having reached the maximal
feasible model - all higher models failed to converge. The types of
convergence failure are: Optimizer reports not having finished (-2)
Fitting ML reference model
Fitting via lm: Reaction ~ 1 + Days
Testing terms
Fitting via lm: Reaction ~ 1
grouping term block score Iteration LRT
1 <NA> 1 NA NA 1 NA 1 NA
2 <NA> Days NA NA Days -32.673 1 6.460934e-15
All terms are significant
>
> # Tests from github issue #2, that also show the use of the 'direction' and 'crit' parameters:
> bm.test <- buildmer(cbind(incidence,size - incidence) ~ period + (1 | herd),
+ family=binomial,data=lme4::cbpp)
Determining predictor order
Fitting via glm: cbind(incidence, size - incidence) ~ 1
Currently evaluating LRT for: period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Updating formula: cbind(incidence, size - incidence) ~ 1 + period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Currently evaluating LRT for: 1 | herd
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Updating formula: cbind(incidence, size - incidence) ~ 1 + period + (1
| herd)
Fitting ML and REML reference models
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Testing terms
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 + (1
| herd)
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
grouping term block score Iteration LRT
1 <NA> 1 NA NA 1 NA 1 NA
2 <NA> period NA NA period -18.706656 1 1.151006e-05
3 herd 1 NA herd 1 -9.303008 1 9.114967e-05
All terms are significant
> bm.test <- buildmer(cbind(incidence,size - incidence) ~ period + (1 | herd),
+ family=binomial,data=lme4::cbpp,buildmerControl=buildmerControl(direction='forward'))
Determining predictor order
Fitting via glm: cbind(incidence, size - incidence) ~ 1
Currently evaluating LRT for: period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Updating formula: cbind(incidence, size - incidence) ~ 1 + period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Currently evaluating LRT for: 1 | herd
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Updating formula: cbind(incidence, size - incidence) ~ 1 + period + (1
| herd)
grouping term block score
1 <NA> 1 NA NA 1 NA
2 <NA> period NA NA period 7.512809e-09
3 herd 1 NA herd 1 9.114967e-05
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
> bm.test <- buildmer(cbind(incidence,size - incidence) ~ period + (1 | herd),
+ family=binomial,data=lme4::cbpp,buildmerControl=buildmerControl(crit='AIC'))
Determining predictor order
Fitting via glm: cbind(incidence, size - incidence) ~ 1
Currently evaluating AIC for: period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Updating formula: cbind(incidence, size - incidence) ~ 1 + period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Currently evaluating AIC for: 1 | herd
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Updating formula: cbind(incidence, size - incidence) ~ 1 + period + (1
| herd)
Fitting ML and REML reference models
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Testing terms
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 + (1
| herd)
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
grouping term block score Iteration AIC
1 <NA> 1 NA NA 1 NA 1 NA
2 <NA> period NA NA period -34.71577 1 -19.60994
3 herd 1 NA herd 1 -12.00527 1 -12.00527
All terms are significant
> bm.test <- buildmer(cbind(incidence,size - incidence) ~ period + (1 | herd),
+ family=binomial,data=lme4::cbpp,
+ buildmerControl=buildmerControl(direction='forward',crit='AIC'))
Determining predictor order
Fitting via glm: cbind(incidence, size - incidence) ~ 1
Currently evaluating AIC for: period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Updating formula: cbind(incidence, size - incidence) ~ 1 + period
Fitting via glm: cbind(incidence, size - incidence) ~ 1 + period
Currently evaluating AIC for: 1 | herd
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
Updating formula: cbind(incidence, size - incidence) ~ 1 + period + (1
| herd)
grouping term block score
1 <NA> 1 NA NA 1 NA
2 <NA> period NA NA period -34.71577
3 herd 1 NA herd 1 -12.00527
Fitting via glmer, with ML: cbind(incidence, size - incidence) ~ 1 +
period + (1 | herd)
>
> # Example showing use of the 'include' parameter to force a particular term into the model
> m1 <- buildmer(Reaction ~ Days,data=lme4::sleepstudy,buildmerControl=list(include=~(1|Subject)))
Determining predictor order
Fitting via lmer, with ML: Reaction ~ 1 + (1 | Subject)
Convergence failure. Reducing terms and retrying... The failure was:
Optimizer reports not having finished (-2)
Error in reduce.model(p, conv) : No terms left for reduction, giving up
Calls: buildmer ... buildmer.fit -> do.call -> order -> reorder -> reduce.model
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.11
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(buildmer)
> test_check('buildmer')
grouping term block score Iteration LRT
1 <NA> 1 NA NA 1 NA 1 NA
2 Sex:Age:Eth:Lrn 1 NA Sex:Age:Eth:Lrn 1 -8.86362 1 0.0001414421
grouping term block score Iteration
1 NA 1 NA NA 1 NA 1
5 NA Eth NA NA Eth -7.3418284 1
3 NA Age NA NA Age -4.3688050 1
7 NA Age:Eth NA NA Age:Eth -4.5213739 1
9 NA Lrn NA NA Lrn -1.4747812 1
2 NA Sex NA NA Sex -0.7363892 1
4 NA Sex:Age NA NA Sex:Age -5.8421931 1
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 1
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 1
8 NA Sex:Age:Eth NA NA Sex:Age:Eth -0.4237551 1
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 1
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 1
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 1
12 NA Sex:Age:Lrn NA NA Sex:Age:Lrn -3.4094829 1
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 1
16 NA Sex:Age:Eth:Lrn NA NA Sex:Age:Eth:Lrn -0.7019217 1
LRT
1 NA
5 NA
3 NA
7 NA
9 NA
2 NA
4 NA
11 NA
6 NA
8 NA
13 NA
15 NA
10 NA
12 NA
14 NA
16 0.4956319
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 2 NA
5 NA Eth NA NA Eth -7.3418284 2 NA
3 NA Age NA NA Age -4.3688050 2 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 2 NA
9 NA Lrn NA NA Lrn -1.4747812 2 NA
2 NA Sex NA NA Sex -0.7363892 2 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 2 NA
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 2 NA
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 2 NA
8 NA Sex:Age:Eth NA NA Sex:Age:Eth -0.4237551 2 0.44347867
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 2 NA
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 2 0.05044914
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 2 NA
12 NA Sex:Age:Lrn NA NA Sex:Age:Lrn -3.4094829 2 0.04329922
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 2 0.10713888
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 3 NA
5 NA Eth NA NA Eth -7.3418284 3 NA
3 NA Age NA NA Age -4.3688050 3 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 3 NA
9 NA Lrn NA NA Lrn -1.4747812 3 NA
2 NA Sex NA NA Sex -0.7363892 3 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 3 NA
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 3 NA
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 3 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 3 NA
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 3 0.05589953
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 3 NA
12 NA Sex:Age:Lrn NA NA Sex:Age:Lrn -3.4094829 3 0.05778817
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 3 0.02479174
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 4 NA
5 NA Eth NA NA Eth -7.3418284 4 NA
3 NA Age NA NA Age -4.3688050 4 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 4 NA
9 NA Lrn NA NA Lrn -1.4747812 4 NA
2 NA Sex NA NA Sex -0.7363892 4 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 4 0.0001968215
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 4 NA
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 4 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 4 NA
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 4 0.1153201660
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 4 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 4 0.0191462752
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 5 NA
5 NA Eth NA NA Eth -7.3418284 5 NA
3 NA Age NA NA Age -4.3688050 5 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 5 1.453244e-01
9 NA Lrn NA NA Lrn -1.4747812 5 NA
2 NA Sex NA NA Sex -0.7363892 5 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 5 9.829745e-05
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 5 1.504820e-01
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 5 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 5 NA
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 5 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 5 2.534679e-03
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 6 NA
5 NA Eth NA NA Eth -7.3418284 6 NA
3 NA Age NA NA Age -4.3688050 6 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 6 0.1214196689
9 NA Lrn NA NA Lrn -1.4747812 6 NA
2 NA Sex NA NA Sex -0.7363892 6 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 6 0.0003568777
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 6 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 6 NA
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 6 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 6 0.0036727027
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 7 NA
5 NA Eth NA NA Eth -7.3418284 7 NA
3 NA Age NA NA Age -4.3688050 7 NA
9 NA Lrn NA NA Lrn -1.4747812 7 NA
2 NA Sex NA NA Sex -0.7363892 7 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 7 0.0003276936
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 7 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 7 NA
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 7 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 7 0.0004243969
[ FAIL 1 | WARN 6 | SKIP 17 | PASS 15 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-buildGLMMadaptive.R:4:2',
'test-buildGLMMadaptive.R:10:2', 'test-buildbam.R:4:2',
'test-buildclmm.R:4:2', 'test-buildcustom.R:4:2', 'test-buildgam.R:4:2',
'test-buildgamm.R:4:2', 'test-buildgamm4.R:4:2', 'test-buildglmmTMB.R:4:2',
'test-buildgls.R:4:2', 'test-buildlme.R:4:2', 'test-buildmer-package.R:4:2',
'test-buildmertree.R:4:2', 'test-buildmultinom.R:4:2',
'test-converged.R:4:2', 'test-diag-formula.method.R:11:2',
'test-re2mgcv.R:6:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-include.R:4:2'): include ───────────────────────────────────────
Error in `reduce.model(p, conv)`: No terms left for reduction, giving up
Backtrace:
▆
1. └─buildmer::buildmer(...) at test-include.R:4:9
2. └─buildmer:::buildmer.fit(p)
3. ├─base::do.call(...)
4. └─buildmer:::order(p = `<named list>`)
5. └─buildmer (local) reorder(p, tab[fxd, ])
6. └─buildmer:::reduce.model(p, conv)
[ FAIL 1 | WARN 6 | SKIP 17 | PASS 15 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.11
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(buildmer)
> test_check('buildmer')
grouping term block score Iteration LRT
1 <NA> 1 NA NA 1 NA 1 NA
2 Sex:Age:Eth:Lrn 1 NA Sex:Age:Eth:Lrn 1 -8.86362 1 0.0001414421
grouping term block score Iteration
1 NA 1 NA NA 1 NA 1
5 NA Eth NA NA Eth -7.3418284 1
3 NA Age NA NA Age -4.3688050 1
7 NA Age:Eth NA NA Age:Eth -4.5213739 1
9 NA Lrn NA NA Lrn -1.4747812 1
2 NA Sex NA NA Sex -0.7363892 1
4 NA Sex:Age NA NA Sex:Age -5.8421931 1
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 1
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 1
8 NA Sex:Age:Eth NA NA Sex:Age:Eth -0.4237551 1
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 1
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 1
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 1
12 NA Sex:Age:Lrn NA NA Sex:Age:Lrn -3.4094829 1
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 1
16 NA Sex:Age:Eth:Lrn NA NA Sex:Age:Eth:Lrn -0.7019217 1
LRT
1 NA
5 NA
3 NA
7 NA
9 NA
2 NA
4 NA
11 NA
6 NA
8 NA
13 NA
15 NA
10 NA
12 NA
14 NA
16 0.4956319
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 2 NA
5 NA Eth NA NA Eth -7.3418284 2 NA
3 NA Age NA NA Age -4.3688050 2 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 2 NA
9 NA Lrn NA NA Lrn -1.4747812 2 NA
2 NA Sex NA NA Sex -0.7363892 2 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 2 NA
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 2 NA
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 2 NA
8 NA Sex:Age:Eth NA NA Sex:Age:Eth -0.4237551 2 0.44347867
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 2 NA
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 2 0.05044914
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 2 NA
12 NA Sex:Age:Lrn NA NA Sex:Age:Lrn -3.4094829 2 0.04329922
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 2 0.10713888
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 3 NA
5 NA Eth NA NA Eth -7.3418284 3 NA
3 NA Age NA NA Age -4.3688050 3 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 3 NA
9 NA Lrn NA NA Lrn -1.4747812 3 NA
2 NA Sex NA NA Sex -0.7363892 3 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 3 NA
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 3 NA
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 3 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 3 NA
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 3 0.05589953
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 3 NA
12 NA Sex:Age:Lrn NA NA Sex:Age:Lrn -3.4094829 3 0.05778817
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 3 0.02479174
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 4 NA
5 NA Eth NA NA Eth -7.3418284 4 NA
3 NA Age NA NA Age -4.3688050 4 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 4 NA
9 NA Lrn NA NA Lrn -1.4747812 4 NA
2 NA Sex NA NA Sex -0.7363892 4 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 4 0.0001968215
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 4 NA
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 4 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 4 NA
15 NA Age:Eth:Lrn NA NA Age:Eth:Lrn -5.0436262 4 0.1153201660
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 4 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 4 0.0191462752
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 5 NA
5 NA Eth NA NA Eth -7.3418284 5 NA
3 NA Age NA NA Age -4.3688050 5 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 5 1.453244e-01
9 NA Lrn NA NA Lrn -1.4747812 5 NA
2 NA Sex NA NA Sex -0.7363892 5 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 5 9.829745e-05
11 NA Age:Lrn NA NA Age:Lrn -2.3115461 5 1.504820e-01
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 5 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 5 NA
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 5 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 5 2.534679e-03
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 6 NA
5 NA Eth NA NA Eth -7.3418284 6 NA
3 NA Age NA NA Age -4.3688050 6 NA
7 NA Age:Eth NA NA Age:Eth -4.5213739 6 0.1214196689
9 NA Lrn NA NA Lrn -1.4747812 6 NA
2 NA Sex NA NA Sex -0.7363892 6 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 6 0.0003568777
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 6 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 6 NA
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 6 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 6 0.0036727027
grouping term block score Iteration LRT
1 NA 1 NA NA 1 NA 7 NA
5 NA Eth NA NA Eth -7.3418284 7 NA
3 NA Age NA NA Age -4.3688050 7 NA
9 NA Lrn NA NA Lrn -1.4747812 7 NA
2 NA Sex NA NA Sex -0.7363892 7 NA
4 NA Sex:Age NA NA Sex:Age -5.8421931 7 0.0003276936
6 NA Sex:Eth NA NA Sex:Eth -1.4839163 7 NA
13 NA Eth:Lrn NA NA Eth:Lrn -0.8697238 7 NA
10 NA Sex:Lrn NA NA Sex:Lrn -0.2816163 7 NA
14 NA Sex:Eth:Lrn NA NA Sex:Eth:Lrn -2.2336293 7 0.0004243969
[ FAIL 1 | WARN 6 | SKIP 17 | PASS 15 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-buildGLMMadaptive.R:4:2',
'test-buildGLMMadaptive.R:10:2', 'test-buildbam.R:4:2',
'test-buildclmm.R:4:2', 'test-buildcustom.R:4:2', 'test-buildgam.R:4:2',
'test-buildgamm.R:4:2', 'test-buildgamm4.R:4:2', 'test-buildglmmTMB.R:4:2',
'test-buildgls.R:4:2', 'test-buildlme.R:4:2', 'test-buildmer-package.R:4:2',
'test-buildmertree.R:4:2', 'test-buildmultinom.R:4:2',
'test-converged.R:4:2', 'test-diag-formula.method.R:11:2',
'test-re2mgcv.R:6:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-include.R:4:2'): include ───────────────────────────────────────
Error in `reduce.model(p, conv)`: No terms left for reduction, giving up
Backtrace:
▆
1. └─buildmer::buildmer(...) at test-include.R:4:9
2. └─buildmer:::buildmer.fit(p)
3. ├─base::do.call(...)
4. └─buildmer:::order(p = `<named list>`)
5. └─buildmer (local) reorder(p, tab[fxd, ])
6. └─buildmer:::reduce.model(p, conv)
[ FAIL 1 | WARN 6 | SKIP 17 | PASS 15 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc