Last updated on 2026-03-07 04:50:25 CET.
| Package | ERROR | OK |
|---|---|---|
| gpcp | 4 | 10 |
Current CRAN status: ERROR: 4, OK: 10
Version: 0.1.0
Check: package dependencies
Result: ERROR
Packages required but not available: 'snpStats', 'VariantAnnotation'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘BiocManager’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘gpcp-Ex.R’ failed
The error most likely occurred in:
> ### Name: runGPCP
> ### Title: Genomic Prediction of Cross Performance This function performs
> ### genomic prediction of cross performance using genotype and phenotype
> ### data.
> ### Aliases: runGPCP
>
> ### ** Examples
>
> # Load phenotype data from CSV
> phenotypeFile <- read.csv(system.file("extdata", "phenotypeFile.csv", package = "gpcp"))
> genotypeFile <- system.file("extdata", "genotypeFile_Chr9and11.vcf", package = "gpcp")
> finalcrosses <- runGPCP(
+ phenotypeFile = phenotypeFile,
+ genotypeFile = genotypeFile,
+ genotypes = "Accession",
+ traits = "YIELD,DMC",
+ weights = c(3, 1),
+ userFixed = "LOC,REP",
+ Ploidy = 2,
+ NCrosses = 150
+ )
Error in runGPCP(phenotypeFile = phenotypeFile, genotypeFile = genotypeFile, :
The 'snpStats' package is required but not installed. Please install it using BiocManager::install('snpStats').
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc