Last updated on 2025-12-14 04:50:12 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| AntibodyForests | 1 | 12 | |
| Platypus | 4 | 6 | 3 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘pwalign’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 4, NOTE: 6, OK: 3
Version: 3.6.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘VDJ_build.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 3.6.0
Check: examples
Result: ERROR
Running examples in ‘Platypus-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GEX_coexpression_coefficient
> ### Title: Coexpression of selected genes
> ### Aliases: GEX_coexpression_coefficient
>
> ### ** Examples
>
> GEX_coexpression_coefficient(GEX = Platypus::small_vgm[[2]]
+ , genes = c("CD19", "CD83"), subsample.n = "none", plot.dotmap = FALSE)
Error:
! The `slot` argument of `FetchData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
Backtrace:
▆
1. └─Platypus::GEX_coexpression_coefficient(...)
2. ├─SeuratObject::FetchData(GEX, vars = genes, slot = "counts")
3. └─SeuratObject:::FetchData.Seurat(GEX, vars = genes, slot = "counts")
4. └─SeuratObject::.Deprecate(...)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 3.6.0
Check: examples
Result: ERROR
Running examples in ‘Platypus-Ex.R’ failed
The error most likely occurred in:
> ### Name: GEX_coexpression_coefficient
> ### Title: Coexpression of selected genes
> ### Aliases: GEX_coexpression_coefficient
>
> ### ** Examples
>
> GEX_coexpression_coefficient(GEX = Platypus::small_vgm[[2]]
+ , genes = c("CD19", "CD83"), subsample.n = "none", plot.dotmap = FALSE)
Error:
! The `slot` argument of `FetchData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
Backtrace:
▆
1. └─Platypus::GEX_coexpression_coefficient(...)
2. ├─SeuratObject::FetchData(GEX, vars = genes, slot = "counts")
3. └─SeuratObject:::FetchData.Seurat(GEX, vars = genes, slot = "counts")
4. └─SeuratObject::.Deprecate(...)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc