Last updated on 2025-09-15 05:50:12 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
bidsr | 13 | ||
dipsaus | 10 | 3 | |
filearray | 1 | 12 | |
ieegio | 13 | ||
lazyarray | 13 | ||
ravepipeline | 13 | ||
ravetools | 2 | 11 | |
readNSx | 13 | ||
rpyANTs | 13 | ||
rpymat | 13 | ||
shidashi | 13 | ||
spfda | 13 | ||
threeBrain | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.3.1
Check: compiled code
Result: NOTE
File ‘dipsaus/libs/dipsaus.so’:
Found non-API call to R: ‘ENCLOS’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.3.1
Check: compiled code
Result: NOTE
File 'dipsaus/libs/x64/dipsaus.dll':
Found non-API call to R: 'ENCLOS'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.3.1
Check: compiled code
Result: NOTE
File ‘dipsaus/libs/dipsaus.so’:
Found non-API calls to R: ‘CLOENV’, ‘ENCLOS’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [29s/46s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(filearray)
R CMD check mode. Using 2 threads.
>
> # Sys.setenv("FILEARRAY_SKIP_COLLAPSE" = "TRUE")
>
> cat(utils::capture.output({
+ print(Sys.getenv())
+ }), sep = "\n", file = stderr())
BIBINPUTS .:.:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bib::/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bib:
BSTINPUTS .:.:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bst::/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bst:
DISPLAY :137
EDITOR vi
FILEARRAY_NUM_THREADS 2
GITHUB_PAT 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
HOME /home/hornik
LANG C.UTF-8
LANGUAGE C
LC_COLLATE C
LD_LIBRARY_PATH /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server
LN_S ln -s
LOGNAME hornik
MAILTO Kurt.Hornik@wu.ac.at
MAKE make
MAKEFLAGS
MAKELEVEL 1
MAKE_TMPDIR /tmp
MFLAGS -k -j84
--jobserver-auth=fifo:/tmp/GMfifo2683847
OLDPWD /home/hornik/tmp/R.check/r-devel-gcc/Work
OMPI_MCA_btl_base_warn_component_unused
0
OMP_NUM_THREADS 3
OMP_THREAD_LIMIT 3
OPENBLAS_NUM_THREADS 1
PAGER /usr/bin/less
PATH /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/filearray.Rcheck/R_check_bin:/home/hornik/bin:/usr/local/bin:/usr/bin:/bin
PIP_DISABLE_PIP_VERSION_CHECK
true
PIP_NO_CACHE_DIR false
PIP_NO_USER 1
PIP_NO_WARN_SCRIPT_LOCATION
false
PIP_REQUIRE_VIRTUALENV
true
POCL_KERNEL_CACHE 0
PWD /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/filearray.Rcheck/tests
RCPP_PARALLEL_NUM_THREADS
4
RETICULATE_MINICONDA_PATH
/tmp/check-CRAN-regular-hornik/data/R/reticulate/miniconda
RETICULATE_VIRTUALENV_ROOT
/tmp/check-CRAN-regular-hornik/.virtualenvs
R_ARCH
R_BATCH
R_BROWSER false
R_BZIPCMD /usr/bin/bzip2
R_CMD /home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rcmd
R_DEFAULT_PACKAGES
R_DOC_DIR /home/hornik/tmp/R.check/r-devel-gcc/Work/build/doc
R_ENVIRON
R_ENVIRON_USER
R_GC_MEM_GROW 2
R_GZIPCMD /usr/bin/gzip
R_HOME /home/hornik/tmp/R.check/r-devel-gcc/Work/build
R_INCLUDE_DIR /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include
R_INSTALL_TAR tar
R_KNITR_OPTIONS knitr.chunk.optipng="-quiet"
R_LIBS /tmp/Rtmp5xfREK/RLIBS_114faa69ec328c
R_LIBS_SITE NULL
R_LIBS_USER NULL
R_MAKEVARS_USER /home/hornik/.R/Makevars-gcc
R_OSTYPE unix
R_PAPERSIZE a4
R_PAPERSIZE_USER a4
R_PARALLEL_PORT random
R_PDFVIEWER false
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD lpr
R_PROFILE
R_PROFILE_USER
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpPQ2f7I
R_SHARE_DIR /home/hornik/tmp/R.check/r-devel-gcc/Work/build/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TESTS startup.Rs
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_USER_CACHE_DIR /tmp/check-CRAN-regular-hornik/cache
R_USER_CONFIG_DIR /tmp/check-CRAN-regular-hornik/config
R_USER_DATA_DIR /tmp/check-CRAN-regular-hornik/data
R_VERSION 4.6.0
R_ZIPCMD /usr/bin/zip
SED /usr/bin/sed
SHELL /bin/sh
SHLVL 0
TAR /usr/bin/tar
TEXINPUTS .:.:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex::/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex:
XAUTHORITY /tmp/xvfb-run.tKlMXT/Xauthority
_CHECK_CRAN_REGULAR_FLAVOR_
r-devel-gcc
_CHECK_CRAN_REGULAR_LIBRARY_DIR_
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages
_CHECK_CRAN_REGULAR_REPOSITORIES_
CRAN=file:///srv/R/Repositories/CRAN;BioCsoft=file:///srv/R/Repositories/Bioconductor/3.21/bioc;BioCann=file:///srv/R/Repositories/Bioconductor/3.21/data/annotation;BioCexp=file:///srv/R/Repositories/Bioconductor/3.21/data/experiment
_R_CALLS_INVALID_NUMERIC_VERSION_
true
_R_CHECK_ALWAYS_LOG_VIGNETTE_OUTPUT_
true
_R_CHECK_AUTOCONF_ true
_R_CHECK_BASHISMS_ true
_R_CHECK_BASHISMS_EXTRA_
true
_R_CHECK_BOGUS_RETURN_
true
_R_CHECK_BROWSER_NONINTERACTIVE_
true
_R_CHECK_CODETOOLS_PROFILE_
suppressPartialMatchArgs=false
_R_CHECK_CODE_ASSIGN_TO_GLOBALENV_
true
_R_CHECK_CODE_ATTACH_ true
_R_CHECK_CODE_DATA_INTO_GLOBALENV_
true
_R_CHECK_CODE_USAGE_VIA_NAMESPACES_
true
_R_CHECK_CODE_USAGE_WITH_ONLY_BASE_ATTACHED_
true
_R_CHECK_COMPILATION_FLAGS_
true
_R_CHECK_CRAN_INCOMING_
true
_R_CHECK_CRAN_INCOMING_CHECK_FILE_URIS_
true
_R_CHECK_CRAN_INCOMING_CHECK_URLS_IN_PARALLEL_
true
_R_CHECK_CRAN_INCOMING_DROP_SUBMISSION_ONLY_
true
_R_CHECK_CRAN_INCOMING_SKIP_DATES_
true
_R_CHECK_CRAN_INCOMING_SKIP_URL_CHECKS_IF_REMOTE_
true
_R_CHECK_CRAN_INCOMING_SKIP_VERSIONS_
true
_R_CHECK_DATALIST_ true
_R_CHECK_DEPENDS_ONLY_DATA_
true
_R_CHECK_DEPRECATED_DEFUNCT_
true
_R_CHECK_DOC_SIZES2_ true
_R_CHECK_DOTCODE_RETVAL_
true
_R_CHECK_DOT_FIRSTLIB_
true
_R_CHECK_EXAMPLE_TIMING_CPU_TO_ELAPSED_THRESHOLD_
2.5
_R_CHECK_EXECUTABLES_EXCLUSIONS_
false
_R_CHECK_FORCE_SUGGESTS_
false
_R_CHECK_FUTURE_FILE_TIMESTAMPS_
true
_R_CHECK_FUTURE_FILE_TIMESTAMPS_LEEWAY_
6h
_R_CHECK_INSTALL_DEPENDS_
true
_R_CHECK_INSTALL_TIMING_CPU_TO_ELAPSED_THRESHOLD_
2.5
_R_CHECK_INTERNALS2_ 1
_R_CHECK_LENGTH_1_CONDITION_
package:_R_CHECK_PACKAGE_NAME_,verbose
_R_CHECK_LICENSE_ TRUE
_R_CHECK_LIMIT_CORES_ true
_R_CHECK_LOG_USE_INFO_
true
_R_CHECK_MATRIX_DATA_ true
_R_CHECK_MBCS_CONVERSION_FAILURE_
true
_R_CHECK_NO_RECOMMENDED_
true
_R_CHECK_NO_STOP_ON_TEST_ERROR_
true
_R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_
true
_R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_
true
_R_CHECK_PACKAGES_USED_IN_DEMO_
true
_R_CHECK_PACKAGES_USED_IN_TESTS_USE_SUBDIRS_
true
_R_CHECK_PACKAGE_DATASETS_SUPPRESS_NOTES_
true
_R_CHECK_PACKAGE_NAME_
filearray
_R_CHECK_PKG_SIZES_ false
_R_CHECK_PRAGMAS_ true
_R_CHECK_RD_CONTENTS_KEYWORDS_
true
_R_CHECK_RD_LINE_WIDTHS_
true
_R_CHECK_RD_MATH_RENDERING_
true
_R_CHECK_RD_NOTE_LOST_BRACES_
true
_R_CHECK_RD_VALIDATE_RD2HTML_
true
_R_CHECK_RD_VALIDATE_RD2HTML_IGNORE_EMPTY_SPANS_
false
_R_CHECK_REPLACING_IMPORTS_
true
_R_CHECK_R_DEPENDS_ true
_R_CHECK_R_ON_PATH_ true
_R_CHECK_SCREEN_DEVICE_
stop
_R_CHECK_SERIALIZATION_
true
_R_CHECK_SHLIB_OPENMP_FLAGS_
true
_R_CHECK_SRC_MINUS_W_IMPLICIT_
true
_R_CHECK_STOP_ON_INVALID_NUMERIC_VERSION_INPUTS_
true
_R_CHECK_SUGGESTS_ONLY_
true
_R_CHECK_SUPPRESS_RANDR_MESSAGE_
true
_R_CHECK_SYSTEM_CLOCK_
false
_R_CHECK_TESTS_NLINES_
0
_R_CHECK_TEST_TIMING_ yes
_R_CHECK_TEST_TIMING_CPU_TO_ELAPSED_THRESHOLD_
2.5
_R_CHECK_THINGS_IN_CHECK_DIR_
true
_R_CHECK_THINGS_IN_TEMP_DIR_EXCLUDE_
^(ompi|pmix-gds-shmem|pulse|runtime-)
_R_CHECK_TIMINGS_ 0
_R_CHECK_TOPLEVEL_FILES_
true
_R_CHECK_VALIDATE_UTF8_
true
_R_CHECK_VC_DIRS_ true
_R_CHECK_VIGNETTES_NLINES_
10000
_R_CHECK_VIGNETTES_SKIP_RUN_MAYBE_
true
_R_CHECK_VIGNETTE_TIMING_
yes
_R_CHECK_VIGNETTE_TIMING_CPU_TO_ELAPSED_THRESHOLD_
2.5
_R_CHECK_VIGNETTE_TITLES_
true
_R_CHECK_XREFS_NOTE_MISSING_PACKAGE_ANCHORS_
true
_R_CHECK_XREFS_USE_ALIASES_FROM_CRAN_
true
_R_GC_FAIL_ON_ERROR_ true
_R_SHLIB_BUILD_OBJECTS_SYMBOL_TABLES_
true
__R_CHECK_DOC_FILES_NOTE_IF_ALL_INTERNAL__
TRUE
>
> test_check("filearray")
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 928 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-collapse.R:85:5', 'test-collapse.R:196:5',
'test-collapse.R:308:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-methods_simple.R:42:17'): Simple operators ───────────────────
Operator `log10` on complex should fail, but did not throw the expected error.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-methods_simple.R:23:5
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_error(...) at test-methods_simple.R:42:17
── Failure ('test-methods_simple.R:42:17'): Simple operators ───────────────────
Operator `log2` on complex should fail, but did not throw the expected error.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-methods_simple.R:23:5
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_error(...) at test-methods_simple.R:42:17
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 928 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.1.0
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.2.4
Check: installed package size
Result: NOTE
installed size is 16.2Mb
sub-directories of 1Mb or more:
libs 15.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.2.0
Check: installed package size
Result: NOTE
installed size is 7.3Mb
sub-directories of 1Mb or more:
R 2.0Mb
threeBrainJS 2.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64