Last updated on 2025-02-21 04:51:46 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 4.36 | 249.27 | 253.63 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 3.67 | 92.65 | 96.32 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 388.90 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 610.67 | OK | |||
| r-devel-macos-arm64 | 1.0.0 | 215.00 | OK | |||
| r-devel-macos-x86_64 | 1.0.0 | 400.00 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 8.00 | 370.00 | 378.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 4.35 | 322.70 | 327.05 | ERROR | |
| r-release-linux-x86_64 | 1.0.0 | 4.90 | 342.79 | 347.69 | OK | |
| r-release-macos-arm64 | 1.0.0 | 176.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 310.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 7.00 | 291.00 | 298.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 189.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 307.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 8.00 | 447.00 | 455.00 | OK |
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘birthdeath_deeptime.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16457 bytes
Input file size = 16559 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12456
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12456
Output IDAT size = 12456 bytes (4001 bytes decrease)
Output file size = 12534 bytes (4025 bytes = 24.31% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17055 bytes
Input file size = 17157 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13490
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13490
Output IDAT size = 13490 bytes (3565 bytes decrease)
Output file size = 13568 bytes (3589 bytes = 20.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13808 bytes
Input file size = 13898 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10886
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10886
Output IDAT size = 10886 bytes (2922 bytes decrease)
Output file size = 10964 bytes (2934 bytes = 21.11% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5055 bytes
Input file size = 5913 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4631
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4612
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4612
Output IDAT size = 4612 bytes (443 bytes decrease)
Output file size = 4690 bytes (1223 bytes = 20.68% decrease)
--- finished re-building ‘birthdeath_deeptime.Rmd’
--- re-building ‘birthdeath_phylogenies.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 8 bits/pixel, 219 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 1749 bytes
Input file size = 2496 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1438
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1431
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1431
Output IDAT size = 1431 bytes (318 bytes decrease)
Output file size = 1509 bytes (987 bytes = 39.54% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7229 bytes
Input file size = 8084 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6581
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6581
Output IDAT size = 6581 bytes (648 bytes decrease)
Output file size = 6659 bytes (1425 bytes = 17.63% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11058 bytes
Input file size = 11148 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8855
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8855
Output IDAT size = 8855 bytes (2203 bytes decrease)
Output file size = 8933 bytes (2215 bytes = 19.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-7-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10565 bytes
Input file size = 10655 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8322
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8322
Output IDAT size = 8322 bytes (2243 bytes decrease)
Output file size = 8400 bytes (2255 bytes = 21.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-7-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11211 bytes
Input file size = 11301 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8739
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8739
Output IDAT size = 8739 bytes (2472 bytes decrease)
Output file size = 8817 bytes (2484 bytes = 21.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22695 bytes
Input file size = 22797 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18296
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18296
Output IDAT size = 18296 bytes (4399 bytes decrease)
Output file size = 18374 bytes (4423 bytes = 19.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22533 bytes
Input file size = 22635 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18207
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18207
Output IDAT size = 18207 bytes (4326 bytes decrease)
Output file size = 18285 bytes (4350 bytes = 19.22% decrease)
Quitting from lines 286-290 [unnamed-chunk-13] (birthdeath_phylogenies.Rmd)
Error: processing vignette 'birthdeath_phylogenies.Rmd' failed with diagnostics:
Too many trees going extinct
--- failed re-building ‘birthdeath_phylogenies.Rmd’
--- re-building ‘deeptime_clocks.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_clocks_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21191 bytes
Input file size = 21293 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15586
Output IDAT size = 15586 bytes (5605 bytes decrease)
Output file size = 15664 bytes (5629 bytes = 26.44% decrease)
--- finished re-building ‘deeptime_clocks.Rmd’
--- re-building ‘deeptime_rocks.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5233 bytes
Input file size = 6091 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4759
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4759
Output IDAT size = 4759 bytes (474 bytes decrease)
Output file size = 4837 bytes (1254 bytes = 20.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-11-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12259 bytes
Input file size = 12349 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9210
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9210
Output IDAT size = 9210 bytes (3049 bytes decrease)
Output file size = 9288 bytes (3061 bytes = 24.79% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6080 bytes
Input file size = 6938 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5623
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5623
Output IDAT size = 5623 bytes (457 bytes decrease)
Output file size = 5701 bytes (1237 bytes = 17.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-13-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6127 bytes
Input file size = 6985 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5687
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5687
Output IDAT size = 5687 bytes (440 bytes decrease)
Output file size = 5765 bytes (1220 bytes = 17.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-14-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5584 bytes
Input file size = 6442 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5118
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5118
Output IDAT size = 5118 bytes (466 bytes decrease)
Output file size = 5196 bytes (1246 bytes = 19.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5315 bytes
Input file size = 6170 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4891
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4891
Output IDAT size = 4891 bytes (424 bytes decrease)
Output file size = 4969 bytes (1201 bytes = 19.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-17-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12407 bytes
Input file size = 12497 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10420
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10420
Output IDAT size = 10420 bytes (1987 bytes decrease)
Output file size = 10498 bytes (1999 bytes = 16.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-18-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14185 bytes
Input file size = 14275 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12242
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12242
Output IDAT size = 12242 bytes (1943 bytes decrease)
Output file size = 12320 bytes (1955 bytes = 13.70% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-19-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14838 bytes
Input file size = 14928 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13091
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13091
Output IDAT size = 13091 bytes (1747 bytes decrease)
Output file size = 13169 bytes (1759 bytes = 11.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-20-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17080 bytes
Input file size = 17182 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12620
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12620
Output IDAT size = 12620 bytes (4460 bytes decrease)
Output file size = 12698 bytes (4484 bytes = 26.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-21-1.png
960x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 85738 bytes
Input file size = 85936 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71968
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71968
Output IDAT size = 71968 bytes (13770 bytes decrease)
Output file size = 72046 bytes (13890 bytes = 16.16% decrease)
--- finished re-building ‘deeptime_rocks.Rmd’
--- re-building ‘intro_R.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-41-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4840 bytes
Input file size = 5695 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4415
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4397
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4397
Output IDAT size = 4397 bytes (443 bytes decrease)
Output file size = 4475 bytes (1220 bytes = 21.42% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-42-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9821 bytes
Input file size = 10691 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9232
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9226
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9226
Output IDAT size = 9226 bytes (595 bytes decrease)
Output file size = 9304 bytes (1387 bytes = 12.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-43-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28145 bytes
Input file size = 28259 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22390
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22390
Output IDAT size = 22390 bytes (5755 bytes decrease)
Output file size = 22468 bytes (5791 bytes = 20.49% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-44-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2999 bytes
Input file size = 3818 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2519
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2507
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2507
Output IDAT size = 2507 bytes (492 bytes decrease)
Output file size = 2585 bytes (1233 bytes = 32.29% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-45-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5590 bytes
Input file size = 6448 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5039
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5010
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5010
Output IDAT size = 5010 bytes (580 bytes decrease)
Output file size = 5088 bytes (1360 bytes = 21.09% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-46-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9515 bytes
Input file size = 10385 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8967
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8967
Output IDAT size = 8967 bytes (548 bytes decrease)
Output file size = 9045 bytes (1340 bytes = 12.90% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-47-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20413 bytes
Input file size = 20515 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14447
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14447
Output IDAT size = 14447 bytes (5966 bytes decrease)
Output file size = 14525 bytes (5990 bytes = 29.20% decrease)
--- finished re-building ‘intro_R.Rmd’
--- re-building ‘phylogenies_and_diversification.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-6-1.png
576x1152 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 114574 bytes
Input file size = 114808 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 90021
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 90021
Output IDAT size = 90021 bytes (24553 bytes decrease)
Output file size = 90099 bytes (24709 bytes = 21.52% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-7-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16927 bytes
Input file size = 17029 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13983
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13983
Output IDAT size = 13983 bytes (2944 bytes decrease)
Output file size = 14061 bytes (2968 bytes = 17.43% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-9-1.png
576x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7084 bytes
Input file size = 7939 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6353
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6353
Output IDAT size = 6353 bytes (731 bytes decrease)
Output file size = 6431 bytes (1508 bytes = 18.99% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-10-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31923 bytes
Input file size = 32037 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29711
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29076
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29076
Output IDAT size = 29076 bytes (2847 bytes decrease)
Output file size = 29154 bytes (2883 bytes = 9.00% decrease)
--- finished re-building ‘phylogenies_and_diversification.Rmd’
--- re-building ‘popgen_drift.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10821 bytes
Input file size = 10911 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8054
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8054
Output IDAT size = 8054 bytes (2767 bytes decrease)
Output file size = 8132 bytes (2779 bytes = 25.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-13-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10574 bytes
Input file size = 10664 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8223
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8223
Output IDAT size = 8223 bytes (2351 bytes decrease)
Output file size = 8301 bytes (2363 bytes = 22.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-14-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5488 bytes
Input file size = 6346 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4991
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4991
Output IDAT size = 4991 bytes (497 bytes decrease)
Output file size = 5069 bytes (1277 bytes = 20.12% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-17-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17834 bytes
Input file size = 17936 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14373
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14373
Output IDAT size = 14373 bytes (3461 bytes decrease)
Output file size = 14451 bytes (3485 bytes = 19.43% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-17-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25892 bytes
Input file size = 26006 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20693
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20693
Output IDAT size = 20693 bytes (5199 bytes decrease)
Output file size = 20771 bytes (5235 bytes = 20.13% decrease)
--- finished re-building ‘popgen_drift.Rmd’
--- re-building ‘popgen_intro.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3887 bytes
Input file size = 4742 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3416
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3416
Output IDAT size = 3416 bytes (471 bytes decrease)
Output file size = 3494 bytes (1248 bytes = 26.32% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8914 bytes
Input file size = 9004 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7060
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7060
Output IDAT size = 7060 bytes (1854 bytes decrease)
Output file size = 7138 bytes (1866 bytes = 20.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12370 bytes
Input file size = 12460 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9913
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9913
Output IDAT size = 9913 bytes (2457 bytes decrease)
Output file size = 9991 bytes (2469 bytes = 19.82% decrease)
--- finished re-building ‘popgen_intro.Rmd’
--- re-building ‘popgen_selection.Rmd’ using rmarkdown
--- finished re-building ‘popgen_selection.Rmd’
--- re-building ‘population_genetics.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-3-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41789 bytes
Input file size = 41927 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33147
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33147
Output IDAT size = 33147 bytes (8642 bytes decrease)
Output file size = 33225 bytes (8702 bytes = 20.76% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-5-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 211828 bytes
Input file size = 212206 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 209894
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 209894
Output IDAT size = 209894 bytes (1934 bytes decrease)
Output file size = 209972 bytes (2234 bytes = 1.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-6-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6902 bytes
Input file size = 7760 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5986
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5978
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5978
Output IDAT size = 5978 bytes (924 bytes decrease)
Output file size = 6056 bytes (1704 bytes = 21.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-7-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42776 bytes
Input file size = 42914 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33074
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33074
Output IDAT size = 33074 bytes (9702 bytes decrease)
Output file size = 33152 bytes (9762 bytes = 22.75% decrease)
--- finished re-building ‘population_genetics.Rmd’
--- re-building ‘rocks_and_clocks.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-4-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42191 bytes
Input file size = 42329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40884
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38739
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38739
Output IDAT size = 38739 bytes (3452 bytes decrease)
Output file size = 38817 bytes (3512 bytes = 8.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9311 bytes
Input file size = 10181 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8379
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8379
Output IDAT size = 8379 bytes (932 bytes decrease)
Output file size = 8457 bytes (1724 bytes = 16.93% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-2.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10030 bytes
Input file size = 10900 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8968
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8968
Output IDAT size = 8968 bytes (1062 bytes decrease)
Output file size = 9046 bytes (1854 bytes = 17.01% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-3.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9755 bytes
Input file size = 10625 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8789
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8789
Output IDAT size = 8789 bytes (966 bytes decrease)
Output file size = 8867 bytes (1758 bytes = 16.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-10-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44449 bytes
Input file size = 44587 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35747
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35747
Output IDAT size = 35747 bytes (8702 bytes decrease)
Output file size = 35825 bytes (8762 bytes = 19.65% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-14-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11705 bytes
Input file size = 11795 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11037
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10286
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10286
Output IDAT size = 10286 bytes (1419 bytes decrease)
Output file size = 10364 bytes (1431 bytes = 12.13% decrease)
--- finished re-building ‘rocks_and_clocks.Rmd’
SUMMARY: processing the following file failed:
‘birthdeath_phylogenies.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64