Last updated on 2026-03-07 04:50:37 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| geneviewer | 2 | 1 | 11 |
| NGLVieweR | 14 |
Current CRAN status: ERROR: 2, NOTE: 1, OK: 11
Version: 0.1.11
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(geneviewer)
>
> test_check("geneviewer")
Saving _problems/test-load_data-18.R
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 356 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-load_data.R:18:3'): Read FASTA from file path ──────────────────
Error in `geneviewer::read_fasta(file_path, sequence = FALSE)`: Biostrings package is not installed. Please install it using BiocManager::install("Biostrings").
Backtrace:
▆
1. └─geneviewer::read_fasta(file_path, sequence = FALSE) at test-load_data.R:18:3
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 356 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.11
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(geneviewer)
>
> test_check("geneviewer")
Saving _problems/test-load_data-18.R
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 356 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-load_data.R:18:3'): Read FASTA from file path ──────────────────
Error in `geneviewer::read_fasta(file_path, sequence = FALSE)`: Biostrings package is not installed. Please install it using BiocManager::install("Biostrings").
Backtrace:
▆
1. └─geneviewer::read_fasta(file_path, sequence = FALSE) at test-load_data.R:18:3
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 356 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.11
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pwalign’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 14