Last updated on 2024-05-17 05:56:52 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 6.47 | 56.49 | 62.96 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 0.30 | 1.60 | 1.90 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 82.76 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 75.78 | OK | |||
| r-devel-windows-x86_64 | 1.2 | 7.00 | 69.00 | 76.00 | OK | |
| r-patched-linux-x86_64 | 1.1 | 6.26 | 52.78 | 59.04 | ERROR | |
| r-release-linux-x86_64 | 1.1 | 4.82 | 51.76 | 56.58 | ERROR | |
| r-release-macos-arm64 | 1.2 | 34.00 | OK | |||
| r-release-macos-x86_64 | 1.2 | 65.00 | OK | |||
| r-release-windows-x86_64 | 1.1 | 9.00 | 66.00 | 75.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.2 | 36.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2 | 66.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2 | 6.00 | 77.00 | 83.00 | OK |
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘rPDBapi-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: perform_search
> ### Title: Perform a Search in the RCSB PDB
> ### Aliases: perform_search
>
> ### ** Examples
>
> search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"),
+ attribute="rcsb_entity_source_organism.taxonomy_lineage.name")
> return_type = "NON_POLYMER_ENTITY"
> results = perform_search(search_operator, return_type)
Querying RCSB Search with the following parameters:
{
"query": {
"type": "terminal",
"service": "text",
"parameters": {
"attribute": "rcsb_entity_source_organism.taxonomy_lineage.name",
"operator": "in",
"value": ["Mus musculus", "Homo sapiens"]
}
},
"request_options": {
"return_all_hits": true
},
"return_type": "non_polymer_entity"
}
Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, :
Request failed with:{"timestamp":"2024-05-14T07:00:30.134+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"}
Calls: perform_search -> perform_search_with_graph
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘bio3d’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘rPDBapi-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: perform_search
> ### Title: Perform a Search in the RCSB PDB
> ### Aliases: perform_search
>
> ### ** Examples
>
> search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"),
+ attribute="rcsb_entity_source_organism.taxonomy_lineage.name")
> return_type = "NON_POLYMER_ENTITY"
> results = perform_search(search_operator, return_type)
Querying RCSB Search with the following parameters:
{
"query": {
"type": "terminal",
"service": "text",
"parameters": {
"attribute": "rcsb_entity_source_organism.taxonomy_lineage.name",
"operator": "in",
"value": ["Mus musculus", "Homo sapiens"]
}
},
"request_options": {
"return_all_hits": true
},
"return_type": "non_polymer_entity"
}
Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, :
Request failed with:{"timestamp":"2024-05-16T02:31:31.319+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"}
Calls: perform_search -> perform_search_with_graph
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘rPDBapi-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: perform_search
> ### Title: Perform a Search in the RCSB PDB
> ### Aliases: perform_search
>
> ### ** Examples
>
> search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"),
+ attribute="rcsb_entity_source_organism.taxonomy_lineage.name")
> return_type = "NON_POLYMER_ENTITY"
> results = perform_search(search_operator, return_type)
Querying RCSB Search with the following parameters:
{
"query": {
"type": "terminal",
"service": "text",
"parameters": {
"attribute": "rcsb_entity_source_organism.taxonomy_lineage.name",
"operator": "in",
"value": ["Mus musculus", "Homo sapiens"]
}
},
"request_options": {
"return_all_hits": true
},
"return_type": "non_polymer_entity"
}
Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, :
Request failed with:{"timestamp":"2024-05-12T14:09:48.189+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"}
Calls: perform_search -> perform_search_with_graph
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'rPDBapi-Ex.R' failed
The error most likely occurred in:
> ### Name: perform_search
> ### Title: Perform a Search in the RCSB PDB
> ### Aliases: perform_search
>
> ### ** Examples
>
> search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"),
+ attribute="rcsb_entity_source_organism.taxonomy_lineage.name")
> return_type = "NON_POLYMER_ENTITY"
> results = perform_search(search_operator, return_type)
Querying RCSB Search with the following parameters:
{
"query": {
"type": "terminal",
"service": "text",
"parameters": {
"attribute": "rcsb_entity_source_organism.taxonomy_lineage.name",
"operator": "in",
"value": ["Mus musculus", "Homo sapiens"]
}
},
"request_options": {
"return_all_hits": true
},
"return_type": "non_polymer_entity"
}
Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, :
Request failed with:{"timestamp":"2024-05-14T13:22:13.437+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"}
Calls: perform_search -> perform_search_with_graph
Execution halted
Flavor: r-release-windows-x86_64