Last updated on 2025-02-21 04:52:09 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2-0 | 9.60 | 926.57 | 936.17 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.2-0 | 6.43 | 580.77 | 587.20 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2-0 | 1565.40 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2-0 | 1600.07 | NOTE | |||
| r-devel-macos-arm64 | 1.2-0 | 405.00 | OK | |||
| r-devel-macos-x86_64 | 1.2-0 | 1037.00 | OK | |||
| r-devel-windows-x86_64 | 1.2-0 | 12.00 | 407.00 | 419.00 | OK | |
| r-patched-linux-x86_64 | 1.2-0 | 11.84 | 571.62 | 583.46 | ERROR | |
| r-release-linux-x86_64 | 1.2-0 | 9.37 | 560.22 | 569.59 | ERROR | |
| r-release-macos-arm64 | 1.2-0 | 380.00 | OK | |||
| r-release-macos-x86_64 | 1.2-0 | 660.00 | OK | |||
| r-release-windows-x86_64 | 1.2-0 | 12.00 | 413.00 | 425.00 | OK | |
| r-oldrel-macos-arm64 | 1.2-0 | 382.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2-0 | 764.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2-0 | 15.00 | 523.00 | 538.00 | OK |
Version: 1.2-0
Check: for unstated dependencies in ‘demo’
Result: NOTE
'::' or ':::' imports not declared from:
‘eha’ ‘flexsurv’ ‘frailtyEM’ ‘frailtypack’ ‘gamlss.cens’ ‘icenReg’
‘mpr’ ‘rms’ ‘rstpm2’ ‘timereg’
'library' or 'require' calls not declared from:
‘cotram’ ‘gamlss.cens’ ‘latex2exp’ ‘mpr’ ‘tramvs’
'data(package=)' calls not declared from:
‘AER’ ‘KONPsurv’ ‘gamlss.data’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2-0
Check: tests
Result: NOTE
Running ‘Coxph-Ex.R’ [20s/51s]
Comparing ‘Coxph-Ex.Rout’ to ‘Coxph-Ex.Rout.save’ ... OK
Running ‘KaplanMeier-Ex.R’ [4s/11s]
Running ‘PI_OVL-Ex.R’ [5s/13s]
Running ‘Polr-Ex.R’ [4s/10s]
Comparing ‘Polr-Ex.Rout’ to ‘Polr-Ex.Rout.save’ ... OK
Running ‘Survreg-Ex.R’ [7s/16s]
Comparing ‘Survreg-Ex.Rout’ to ‘Survreg-Ex.Rout.save’ ... OK
Running ‘bugfixes.R’ [114s/255s]
Running ‘intercepts-Ex.R’ [7s/14s]
Comparing ‘intercepts-Ex.Rout’ to ‘intercepts-Ex.Rout.save’ ... OK
Running ‘mmlt-Ex.R’ [254s/418s]
Comparing ‘mmlt-Ex.Rout’ to ‘mmlt-Ex.Rout.save’ ... OK
Running ‘mmlt-interface.R’ [82s/122s]
Running ‘mtram-Ex.R’ [21s/27s]
Comparing ‘mtram-Ex.Rout’ to ‘mtram-Ex.Rout.save’ ...11,17d10
< Warning messages:
< 1: In optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower, :
< convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
< 2: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
< unable to evaluate scaled gradient
< 3: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
< Model failed to converge: degenerate Hessian with 1 negative eigenvalues
27c20
< 'log Lik.' -Inf (df=6)
---
> 'log Lik.' -876 (df=6)
34c27
< [1] 0.041
---
> [1] 0.039
43c36
< -10.38 0.43
---
> -9.82 0.41
51c44
< [1] 1 0 1
---
> [1] 0.929 0.018 0.223
60,61c53,54
< [1,] 506 10
< [2,] 10 29
---
> [1,] 565 11
> [2,] 11 33
68,69c61,62
< (Intercept) 587 0
< Days 0 587
---
> (Intercept) 565 11
> Days 11 33
72c65
< 24 24
---
> 23.8 5.7
75,76c68,69
< (Intercept) 1 0
< Days 0 1
---
> (Intercept) 1.000 0.081
> Days 0.081 1.000
Running ‘stram-Ex.R’ [23s/34s]
Comparing ‘stram-Ex.Rout’ to ‘stram-Ex.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2-0
Check: tests
Result: NOTE
Running ‘Coxph-Ex.R’ [23s/66s]
Comparing ‘Coxph-Ex.Rout’ to ‘Coxph-Ex.Rout.save’ ... OK
Running ‘KaplanMeier-Ex.R’ [4s/11s]
Running ‘PI_OVL-Ex.R’ [5s/15s]
Running ‘Polr-Ex.R’
Comparing ‘Polr-Ex.Rout’ to ‘Polr-Ex.Rout.save’ ... OK
Running ‘Survreg-Ex.R’ [7s/20s]
Comparing ‘Survreg-Ex.Rout’ to ‘Survreg-Ex.Rout.save’ ... OK
Running ‘bugfixes.R’ [112s/233s]
Running ‘intercepts-Ex.R’ [7s/12s]
Comparing ‘intercepts-Ex.Rout’ to ‘intercepts-Ex.Rout.save’ ... OK
Running ‘mmlt-Ex.R’ [248s/442s]
Comparing ‘mmlt-Ex.Rout’ to ‘mmlt-Ex.Rout.save’ ... OK
Running ‘mmlt-interface.R’ [79s/131s]
Running ‘mtram-Ex.R’ [26s/39s]
Comparing ‘mtram-Ex.Rout’ to ‘mtram-Ex.Rout.save’ ...11,17d10
< Warning messages:
< 1: In optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower, :
< convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
< 2: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
< unable to evaluate scaled gradient
< 3: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
< Model failed to converge: degenerate Hessian with 1 negative eigenvalues
27c20
< 'log Lik.' -Inf (df=6)
---
> 'log Lik.' -876 (df=6)
34c27
< [1] 0.041
---
> [1] 0.039
43c36
< -10.38 0.43
---
> -9.82 0.41
51c44
< [1] 1 0 1
---
> [1] 0.929 0.018 0.223
60,61c53,54
< [1,] 506 10
< [2,] 10 29
---
> [1,] 565 11
> [2,] 11 33
68,69c61,62
< (Intercept) 587 0
< Days 0 587
---
> (Intercept) 565 11
> Days 11 33
72c65
< 24 24
---
> 23.8 5.7
75,76c68,69
< (Intercept) 1 0
< Days 0 1
---
> (Intercept) 1.000 0.081
> Days 0.081 1.000
Running ‘stram-Ex.R’ [23s/35s]
Comparing ‘stram-Ex.Rout’ to ‘stram-Ex.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2-0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘mtram.Rnw’ using knitr
** Processing: figure/mtram-toenail_OR_2-1.png
1800x1200 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 260592 bytes
Input file size = 261042 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 234718
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 234718
Output IDAT size = 234718 bytes (25874 bytes decrease)
Output file size = 234796 bytes (26246 bytes = 10.05% decrease)
Quitting from lines 1329-1334 [mtram-toenail_glmer_RS] (mtram.Rnw)
Error: processing vignette 'mtram.Rnw' failed with diagnostics:
PIRLS loop resulted in NaN value
--- failed re-building ‘mtram.Rnw’
--- re-building ‘tram.Rnw’ using knitr
--- finished re-building ‘tram.Rnw’
SUMMARY: processing the following file failed:
‘mtram.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64