Last updated on 2025-12-07 04:50:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 17.47 | 450.85 | 468.32 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 11.32 | 188.82 | 200.14 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 41.00 | 778.00 | 819.00 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 72.00 | 998.72 | 1070.72 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 19.00 | 534.00 | 553.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 18.48 | 433.41 | 451.89 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 16.78 | 425.81 | 442.59 | OK | |
| r-release-macos-arm64 | 0.1.2 | 7.00 | 131.00 | 138.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 19.00 | 632.00 | 651.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 20.00 | 541.00 | 561.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 8.00 | 130.00 | 138.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1.2 | 19.00 | 585.00 | 604.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.1.2 | 28.00 | 749.00 | 777.00 | NOTE |
Version: 0.1.2
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'DiagrammeR', 'knitr', 'nlmixr2', 'nlmixr2est', 'rmarkdown',
'spelling', 'xpose.nlmixr2'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: namespace ‘nlmixr2est’ is not available and has been replaced
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘xpose.xtras-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: backfill_nlmixr2_props
> ### Title: Populate some properties from nlmixr2 fit
> ### Aliases: backfill_nlmixr2_props
>
> ### ** Examples
>
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ get_prop("condn")
[1] "not implemented"
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ backfill_nlmixr2_props() %>%
+ get_prop("condn")
Error in `backfill_nlmixr2_props()`:
! Incompatible nlmixr2/rxode2 fit object detected
ℹ This object was created with rxode2 < 5.0 and cannot be used with rxode2 >= 5.0
✖ The internal rxUi structure is incompatible between versions
! Please regenerate the fit object using current versions of nlmixr2est and rxode2
Backtrace:
▆
1. ├─... %>% get_prop("condn")
2. ├─xpose.xtras::get_prop(., "condn")
3. │ └─xpose::get_summary(xpdb)
4. │ └─xpose::check_xpdb(xpdb, check = "summary")
5. │ └─xpose::is.xpdb(xpdb)
6. └─xpose.xtras::backfill_nlmixr2_props(.)
7. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [115s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(xpose.xtras)
ℹ xpose is not currently attached.
Attaching package: 'xpose.xtras'
The following object is masked from 'package:stats':
filter
>
> test_check("xpose.xtras")
Saving _problems/test-nlmixr2-10.R
Saving _problems/test-nlmixr2-64.R
Saving _problems/test-nlmixr2-67.R
Saving _problems/test-nlmixr2-71.R
Saving _problems/test-xset_diagram-4.R
[ FAIL 5 | WARN 0 | SKIP 11 | PASS 794 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3',
'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3'
• requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in%
getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3',
'test-diag_constants.R:129:3'
• {DiagrammeR} is not installed. (1): 'test-xset_diagram.R:5:3'
• {nlmixr2est} is not installed (1): 'test-nlmixr2.R:315:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-nlmixr2.R:8:3'): old fit detection works correctly ───────────
Expected `test_nlmixr2_is_old_fit(xpdb_nlmixr2)` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
── Failure ('test-nlmixr2.R:62:3'): nlmixr2 is compatible ──────────────────────
Expected `nlmixr2_as_xtra(fit_example)` not to throw any errors.
Actually got a <rlib_error_package_not_found> with message:
The package "xpose.nlmixr2" is required.
── Failure ('test-nlmixr2.R:65:3'): nlmixr2 is compatible ──────────────────────
Expected `nlmixr2_as_xtra(fit_example, .skip_assoc = TRUE)` not to throw any errors.
Actually got a <rlib_error_package_not_found> with message:
The package "xpose.nlmixr2" is required.
── Error ('test-nlmixr2.R:68:3'): nlmixr2 is compatible ────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `nlmixr2_as_xtra(fit_example)`: The package "xpose.nlmixr2" is required.
Backtrace:
▆
1. ├─testthat::expect_failure(...) at test-nlmixr2.R:68:3
2. │ └─testthat:::capture_success_failure(expr)
3. │ └─base::withCallingHandlers(...)
4. ├─testthat::expect_identical(...)
5. │ └─testthat::quasi_label(enquo(object), label)
6. │ └─rlang::eval_bare(expr, quo_get_env(quo))
7. └─xpose.xtras::nlmixr2_as_xtra(fit_example)
8. └─rlang::check_installed("xpose.nlmixr2")
── Failure ('test-xset_diagram.R:2:3'): diagram gets generated ─────────────────
Expected `diagram_lineage(pheno_set)` not to throw any errors.
Actually got a <rlib_error_package_not_found> with message:
The package "DiagrammeR" is required.
[ FAIL 5 | WARN 0 | SKIP 11 | PASS 794 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: installed package size
Result: NOTE
installed size is 9.5Mb
sub-directories of 1Mb or more:
data 3.4Mb
doc 3.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64