mse() is added to the package.Function predict.bdgraph() is added to the
package.
Function posterior.predict() is added to the
package.
In functions bdgraph(), bdgraph.mpl(),
and bdgraph.dw(), option g.prior is changed
from 0.5 to 0.2.
Function auc() is added to the package.
In function plotroc(), option calibrate
is added.
Data set churn is removed.
Bug fixed for plotroc() function.
In function plotroc(), options color,
typeline, size, xlab, and
ylab, and some more options are added.
In function bdgraph.sim(), options
type="t" and type="alternative-t" are
added.
In function bdgraph.sim(), option nu is
added for the cases type="t" and
type="alternative-t".
Bug fixed for compare() function.
In function compare(), option est is
replaced.
In function plotroc(), option est is
replaced.
In functions bdgraph(), bdgraph.mpl(),
and bdgraph.dw(), option verbose is
added.
In function plotcoda(), option verbose
is added.
A new file is added to the vignette of package.
Bug fixed for bdgraph() function with option
method = gcgm and algorithm = rj-dmh.
Function bdgraph.dw() is added to the
package.
Function bdw.reg() is added to the package.
In functions graph.sim() and
bdgraph.sim(), option graph = "smallworld" is
added.
In functions plot.graph() and
plot.bdgraph(), options layout,
vertex.size, vertex.color, and
vertex.label.dist are added.
In function bdgraph.sim(), options
range.mu and range.dispersion are
added.
Function roc() is added to the package.
Function conf.mat() is added to the
package.
Function conf.mat.plot() is added to the
package.
Function sparsity() is added to the
package.
Functions ddweibull(), pdweibull(),
qdweibull(), rdweibull() are added to the
package.
In functions bdgraph(), bdgraph.mpl(),
and bdgraph.ts(), option print is
removed.
In function bdgraph.sim(), option
type="dw" is added.
In function bdgraph.sim(), option
type="discrete" is changed to
type="count".
Bug fixed for gnorm() function.
README is added to the package.
bf() is added to the package.adj2link() is added to the package.link2adj() is added to the package.bdgraph.ts() is removed.precision() is added to the package.covariance() is added to the package.Bug fixed for compare() function.
Function get_graph() is added to the package and
used inside function compare().
Functions get_g_prior(), get_g_start(),
get_S_n_p(), get_K_start(), and
get_cores() are added to the package and used inside
function bdgraph().
compare(), option est4 is
added.In functions rgwish(), rgcwish() and
gnorm(), option adj.g is changed to
adj.
In function compare(), option sim.obj
is changed to target.
In function compare(), option
bdgraph.obj is changed to est.
In function compare(), option
bdgraph.obj2 is changed to est2.
In function compare(), option
bdgraph.obj3 is changed to est3.
In function plotroc(), option sim.obj
is changed to target.
In function plotroc(), option
bdgraph.obj is changed to est.
In function plotroc(), option
bdgraph.obj2 is changed to est2.
In function plotroc(), option
bdgraph.obj3 is changed to est3.
In function plotroc(), option
bdgraph.obj4 is changed to est4.
Bug fixed for bdgraph() function with option
method = gcgm.
Functions summary.bdgraph,
plot.bdgraph, and print.bdgraph are
modified.
Files configure and configure.ac are
removed and files Makevars and Makevars.win
are modified accordingly.
In functions bdgraph(), bdgraph.mpl(),
and bdgraph.ts(), option save.all is changed
to save.
In functions bdgraph() and
bdgraph.mpl(), option multi.update is changed
to jump.
In functions bdgraph() and
bdgraph.ts(), option prior.df is changed to
df.prior.
In function pgraph(), option adj_g is
changed to adj.
Option threshold is added to function
rgwish().
Option threshold is added to function
bdgraph().
Option not.cont is added to function
bdgraph().
In function compare(), option colnames
is changed to main.
In functions bdgraph() and
bdgraph.mpl(), option g.space is removed.
Instead user can use option g.prior.
Bug fixed for bdgraph.ts() function.
Data set churn is added.
rgwish() and
rcgwish().graph.sim is added to the package.plot.graph is added to the package.rmvnorm is added to the package.bdgraph.ts, rcwish, and
rcgwish are added to the package.local_rates_ggm_mpl in cpp is added for
bdgraph.mpl function.configure and configure.ac are added to
the package for Makevars file.bdgraph.ts, rcwish, and
rcgwish are removed from the package.dgm-binary is added to function
bdgraph() which is for running Hill-Climbing algorihtm for
binary data.configure and configure.ac are added to
configure checks of C++ codes.bdgraph.mpl() is added to the package, which
is based on Marginal Pseudo-Likelihood estimation.gcgm, step copula are
implimented in parallel using OpenMP in C++.bdgraph.ts is implimented in parallel using
OpenMP in C++.g.prior is added to function
bdgraph(), for prior distribution of the graph.cores is added to function
bdgraph(), for determining the number of cores to use for
parallel execution.transfer() is added to the package.bdgraph.ts(), rgcwish(), and
rcwish() are added to the package.phat() is changed to
plinks().prob() is changed to
pgraph().log_Ig() is changed to
gnorm().I.g() is chenged to log_Ig() and
it is implemented in C++.bdgraph() fonction.I.g is added.