INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <doi:10.1186/s13073-016-0319-7>.

Version:	1.5
Imports:	missMDA
Published:	2016-12-09
DOI:	10.32614/CRAN.package.INSPIRE
Author:	Safiye Celik
Maintainer:	Safiye Celik <safiye at cs.washington.edu>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	inspire.cs.washington.edu
NeedsCompilation:	yes
CRAN checks:	INSPIRE results

Documentation:

Reference manual:

INSPIRE.pdf

Downloads:

Package source:	INSPIRE_1.5.tar.gz
Windows binaries:	r-devel: INSPIRE_1.5.zip, r-release: INSPIRE_1.5.zip, r-oldrel: INSPIRE_1.5.zip
macOS binaries:	r-release (arm64): INSPIRE_1.5.tgz, r-oldrel (arm64): INSPIRE_1.5.tgz, r-release (x86_64): INSPIRE_1.5.tgz, r-oldrel (x86_64): INSPIRE_1.5.tgz
Old sources:	INSPIRE archive

Linking:

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