SDMtune: Species Distribution Model Selection
User-friendly framework that enables the training and the evaluation of species distribution models (SDMs). The package implements functions for data driven variable selection and model tuning and includes numerous utilities to display the results. All the functions used to select variables or to tune model hyperparameters have an interactive real-time chart displayed in the 'RStudio' viewer pane during their execution.
| Version: | 1.3.1 |
| Depends: | R (≥ 4.1.0) |
| Imports: | cli (≥ 3.4.1), dismo (≥ 1.3-9), gbm (≥ 2.1.5), ggplot2 (≥ 3.4.0), jsonlite (≥ 1.6), maxnet (≥ 0.1.4), methods, nnet (≥ 7.3-12), randomForest (≥ 4.6-14), Rcpp (≥ 1.0.1), rlang (≥ 0.4.5), rstudioapi (≥ 0.10), stringr (≥ 1.4.0), terra (≥ 1.6-47), whisker (≥ 0.3-2) |
| LinkingTo: | Rcpp |
| Suggests: | covr, htmltools (≥ 0.3.6), kableExtra (≥ 1.1.0), knitr (≥ 1.23), maps (≥ 3.3.0), pkgdown (≥ 2.0.7), plotROC (≥ 2.2.1), rasterVis (≥ 0.50), reshape2 (≥ 1.4.3), rJava (≥ 0.9-11), rmarkdown (≥ 2.16), scales (≥ 1.0.0), testthat (≥ 3.1.7), withr (≥ 2.5.0), zeallot (≥ 0.1.0) |
| Published: | 2023-07-03 |
| DOI: | 10.32614/CRAN.package.SDMtune |
| Author: | Sergio Vignali 
[aut, cre],
Arnaud Barras
[aut],
Veronika Braunisch
[aut],
Conservation Biology - University of Bern [fnd] |
| Maintainer: | Sergio Vignali <sergio.vignali at unibe.ch> |
| BugReports: | https://github.com/ConsBiol-unibern/SDMtune/issues |
| License: | GPL-3 |
| URL: | https://consbiol-unibern.github.io/SDMtune/ |
| NeedsCompilation: | yes |
| SystemRequirements: | Java (>= 8) |
| Language: | en-US |
| Citation: | SDMtune citation info |
| Materials: | README NEWS |
| CRAN checks: | SDMtune results |
Documentation:
| Reference manual: | SDMtune.pdf |
| Vignettes: |
SDMtune - basic use SDMtune - hyperparameter tuning SDMtune - presence absence models SDMtune - variable selection |
Downloads:
| Package source: | SDMtune_1.3.1.tar.gz |
| Windows binaries: | r-devel: SDMtune_1.3.1.zip, r-release: SDMtune_1.3.1.zip, r-oldrel: SDMtune_1.3.1.zip |
| macOS binaries: | r-release (arm64): SDMtune_1.3.1.tgz, r-oldrel (arm64): SDMtune_1.3.1.tgz, r-release (x86_64): SDMtune_1.3.1.tgz, r-oldrel (x86_64): SDMtune_1.3.1.tgz |
| Old sources: | SDMtune archive |
Linking:
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