Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs).
Helpful reading and a vignette in bookdown format is provided on the package site <https://zielslab.github.io/SIPmg.github.io/>.
| Version: |
1.4.1 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
HTSSIP, dplyr, lazyeval, phyloseq, plyr, stringr, tibble, tidyr, magrittr, ggplot2, ggpubr, purrr, rlang, MASS, DESeq2, data.table, utils |
| Suggests: |
rmarkdown, knitr, EBImage, readr, BiocManager |
| Published: |
2023-02-22 |
| DOI: |
10.32614/CRAN.package.SIPmg |
| Author: |
Pranav Sampara [aut, cre],
Kate Waring [ctb],
Ryan Ziels [aut] |
| Maintainer: |
Pranav Sampara <pranav.sai.4 at gmail.com> |
| BugReports: |
https://github.com/ZielsLab/SIPmg |
| License: |
GPL-2 |
| URL: |
https://zielslab.github.io/SIPmg.github.io/ |
| NeedsCompilation: |
yes |
| CRAN checks: |
SIPmg results |