Releases will be numbered with the following semantic versioning format:
<major>.<minor>.<patch>
And constructed with the following guidelines:
Breaking backward compatibility bumps the major (and resets the minor and patch)
New additions without breaking backward compatibility bumps the minor (and resets the patch)
Bug fixes and misc changes bumps the patch
cdm.fig and cdm.misstbl to include Cox proportional hazards modelcomparerel to compare reliability estimatescalcrel to use confintfor SRD instead of confint.defaultt.test to calcrel for internal consistency.tbl to include both summary statistics and statistical analyses.cdm.miss and cdm.figquestionairecalcrel to calculate reliability estimates.PLR3000 to accept recordings without marking.dynamic_artefacts setting to the dilations function and documentation. Used to dynamically assess artefacts. Also renamed artefacts to static_artefacts.resting_delay setting to the dilations function and documentation. Used to assess delay the subsequent period for assessment.dilations function and documentation. Used to assess dilations from PLR3000.sRCT function and documentation. Now applies random effect of site, and add relative risks together using ln-number instead of absolute numbersclinmon documentationrrGcompclinmon documentationPLR3000Added the sRCT-function to generate simulated randomized clinical trials. Much more work to add
Added the rrGcomp-function to calculate relative risk using G-computation from an individual participant dataframe.
Added the PLR3000-function to convert data extracted from NeurOptics PLR-3000 to a long format dataframe.
iscus-function to convert XML microdialysis data to a dataframe.TFA and clinmon functions, especially the overlapping functionality did not produce Mx, PRx or CPPopt.Changed name from clinmon to clintools to allow for inclusion of other function than only hemodynamic indices.
Based on the matlab-script created by David Simpsons in 2015 the TFA-function have been added to calculate the transfer function analysis.
The test data from 2015 has also been addedd data(tfa_sample_data), data(tfa_sample_data1), and data(tfa_sample_data2) to underline the script generates the same results as the Matlab-script.
Added the ortable-function which generates an Odds ratio table from a logistic regression glm.
Simplified the package, to calculate all the indices in clinmon(). clinmon() uses a continuous recording and returns a dataframe with hemodynamic indices for every period, epoch or block depending on the chosen output. Includes COest, CPPopt, CVRi, Dx, Mx, PI, PRx, PWA, RI, and Sx (see details).
Test data set is added to the package in two resolutions 1000 Hz, and 10 Hz. The corresponding deleter-file is also added.
This is the first version of the package put on CRAN
Correlation coefficient based indices Dx, Sx, Mx and PRx are functional, and validated through ICM+
Furthermore indices such as CVRi, PI, RI, PWA, and CO are functional.
CPPopt and TFA will be added in future versions