Class jalview.datamodel.SequenceTest

all > jalview.datamodel > SequenceTest
46

tests
0

failures
0

ignored
0.007s

duration
100%

successful

Tests

Test Duration Result
testAddAlignmentAnnotation 0.001s passed
testAddDBRef 0s passed
testAddPDBId 0s passed
testAddSequenceFeatures 0s passed
testCheckValidRange 0s passed
testCopyConstructor_noDataset 0s passed
testCopyConstructor_withDataset 0s passed
testCreateDatasetSequence 0s passed
testDeleteChars 0s passed
testDeleteChars_withDbRefsAndFeatures 0s passed
testDeleteChars_withGaps 0.001s passed
testDeriveSequence_existingDataset 0s passed
testDeriveSequence_noDatasetGapped 0s passed
testDeriveSequence_noDatasetUngapped 0s passed
testFindFeatures 0s passed
testFindIndex 0s passed
testFindIndex_withCursor 0s passed
testFindPosition 0.001s passed
testFindPositionMap 0s passed
testFindPosition_withCursor 0.001s passed
testFindPosition_withCursorAndEdits 0s passed
testFindPositions 0.001s passed
testGapBitset 0s passed
testGapMap 0s passed
testGetAlignmentAnnotations_forCalcIdAndLabel 0s passed
testGetAlignmentAnnotations_forCalcIdLabelAndDescription 0s passed
testGetAnnotation 0s passed
testGetAnnotation_forLabel 0s passed
testGetCharAt 0s passed
testGetPrimaryDBRefs_nucleotide 0s passed
testGetPrimaryDBRefs_peptide 0s passed
testGetSequence 0s passed
testGetSequenceFeatures 0s passed
testGetStartGetEnd 0s passed
testGetSubsequence 0.001s passed
testInsertCharAt 0s passed
testInsertGapsAndGapmaps 0s passed
testIsProtein 0s passed
testIsProteinWithXorNAmbiguityCodes 0s passed
testLocateVisibleStartofSequence 0.001s passed
testReplace 0s passed
testSetDatasetSequence_cascading 0s passed
testSetDatasetSequence_toSelf 0s passed
testSetName 0s passed
testTransferAnnotation 0s passed
testUpdatePDBIds 0s passed

Standard output

>>>>>> 2
>SEQ1/1-50
PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT
>SEQ2/1-50
PTEIKCYRTWEAPNNPMRWNLIDVIILWTGQRPNKENMIPESDFAI-WDWT
>SEQ3/1-50
PTEIICYRTWRNPNNPMRWNLIRVIILWTGMRPNKGNMIPESDFHI-WDWT
>SEQ4/1-50
PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRSNKGNIIPESDFHI-WDWT
>SEQ5/1-50
PTEMICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPASDFHI-WDWT
>SEQ6/1-50
PTEIICYRTNRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHR-WDWT
>SEQ7/1-50
PTEIICYRTWRAPNNPMRWNLIDVIILWHGQRPNKGNMIPESDFHI-WDWT
>SEQ8/1-50
PTEIICYFTWRAPNNPMRWNLIDVIILWTTQRPNKGNMIPESDFHI-WDAT
>SEQ9/1-50
PTEIVCYRTWRAPNNPMRWNIIDVIILWTGQRPNKGNMNPESDFHI-WDWV
>SEQ10/1-50
PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMNPESDFHI-WDWT
>SEQ11/1-50
PTEAICYRTWRAPNNPMRWNLIDVIILWTQQRPNKGNMIPESDMHI-WDWT
>SEQ12/1-50
PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT
>SEQ13/1-50
PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT
>SEQ14/1-50
PTEIICYRTWRAPNQPMRWNLIDVIILWTGQRPNKGNMPPESDFHI-WDWT
>SEQ15/1-50
PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMICESAFHI-WDWT
>SEQ16/1-50
PTEICCYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT
>SEQ17/1-50
PTEIICYRTWRAPNNPMTWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT
>SEQ18/1-50
PTEIICYRTIRAPNNPMRWNLIDVIILWTGQRPNKGWMIPESDFHI-WDWN
>SEQ19/1-50
PFEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNCGNMIPESDFHI-WWWE
>SEQ20/1-50
TTEIICYRTWRAPNNPMRWNLIDVIILWTGQNPNKGNMIPESDFHI-WLWT

Standard error

SequenceFeature type may not be null: 4 8 null desc
POSSIBLE IMPLEMENTATION ERROR: null sequence name passed to constructor.