CRAN Package Check Results for Maintainer ‘Anna Frances-Abellan <anna.frances at uab.cat>’

Last updated on 2025-10-16 05:51:28 CEST.

Package	ERROR	OK
biodosetools	4	8

Package biodosetools

Current CRAN status: ERROR: 4, OK: 8

Version: 3.6.2
Check: tests
Result: ERROR Running ‘testthat.R’ [19s/23s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biodosetools) Loading required package: shiny Loading required package: golem > > test_check("biodosetools") ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead [ FAIL 1 | WARN 1 | SKIP 1 | PASS 455 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:71:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-golem-recommended.R:2:3'): app ui ────────────────────────────── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3 2. ├─htmltools::tagList(...) 3. │ └─rlang::dots_list(...) 4. ├─shinydashboard::dashboardPage(...) 5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper") 6. └─biodosetools:::dashboard_body() 7. ├─shinydashboard::dashboardBody(...) 8. │ ├─htmltools::div(...) 9. │ │ └─rlang::dots_list(...) 10. │ └─tags$section(class = "content", ...) 11. │ └─rlang::dots_list(...) 12. ├─shinydashboard::tabItems(...) 13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane") 14. └─biodosetools:::dashboard_home() 15. ├─shinydashboard::tabItem(...) 16. │ └─htmltools::div(...) 17. │ └─rlang::dots_list(...) 18. ├─htmltools::div(...) 19. │ └─rlang::dots_list(...) 20. └─htmltools::includeMarkdown(...) 21. └─markdown::mark(path, output = NULL) 22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 24. └─base::file(con, "w") [ FAIL 1 | WARN 1 | SKIP 1 | PASS 455 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.7
Check: tests
Result: ERROR Running ‘testthat.R’ [13s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biodosetools) Loading required package: shiny Loading required package: golem > > test_check("biodosetools") ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead [ FAIL 1 | WARN 2 | SKIP 1 | PASS 455 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:71:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-golem-recommended.R:2:3'): app ui ────────────────────────────── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3 2. ├─htmltools::tagList(...) 3. │ └─rlang::dots_list(...) 4. ├─shinydashboard::dashboardPage(...) 5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper") 6. └─biodosetools:::dashboard_body() 7. ├─shinydashboard::dashboardBody(...) 8. │ ├─htmltools::div(...) 9. │ │ └─rlang::dots_list(...) 10. │ └─tags$section(class = "content", ...) 11. │ └─rlang::dots_list(...) 12. ├─shinydashboard::tabItems(...) 13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane") 14. └─biodosetools:::mod_fitting_dicent_ui(...) 15. ├─shinydashboard::tabItem(...) 16. │ └─htmltools::div(...) 17. │ └─rlang::dots_list(...) 18. ├─shiny::fluidRow(...) 19. │ └─htmltools::div(class = "row", ...) 20. │ └─rlang::dots_list(...) 21. ├─shinydashboard::box(...) 22. │ ├─htmltools::div(...) 23. │ │ └─rlang::dots_list(...) 24. │ ├─htmltools::div(...) 25. │ │ └─rlang::dots_list(...) 26. │ └─htmltools::div(class = "box-body", ...) 27. │ └─rlang::dots_list(...) 28. ├─bsplus::bs_modal(...) 29. │ └─htmltools::div(class = "modal-body", body) 30. │ └─rlang::dots_list(...) 31. ├─htmltools::tagList(...) 32. │ └─rlang::dots_list(...) 33. ├─shiny::conditionalPanel(...) 34. │ └─htmltools::div(...) 35. │ └─rlang::dots_list(...) 36. └─biodosetools:::include_help("fitting/count_data_input.md") 37. ├─shiny::withMathJax(...) 38. │ └─htmltools::tagList(...) 39. │ └─rlang::dots_list(...) 40. └─htmltools::includeMarkdown(system.file("app/help", ..., package = "biodosetools")) 41. └─markdown::mark(path, output = NULL) 42. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 43. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 44. └─base::file(con, "w") [ FAIL 1 | WARN 2 | SKIP 1 | PASS 455 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.6.2
Check: tests
Result: ERROR Running ‘testthat.R’ [18s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biodosetools) Loading required package: shiny Loading required package: golem > > test_check("biodosetools") ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead [ FAIL 1 | WARN 1 | SKIP 1 | PASS 455 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:71:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-golem-recommended.R:2:3'): app ui ────────────────────────────── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3 2. ├─htmltools::tagList(...) 3. │ └─rlang::dots_list(...) 4. ├─shinydashboard::dashboardPage(...) 5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper") 6. └─biodosetools:::dashboard_body() 7. ├─shinydashboard::dashboardBody(...) 8. │ ├─htmltools::div(...) 9. │ │ └─rlang::dots_list(...) 10. │ └─tags$section(class = "content", ...) 11. │ └─rlang::dots_list(...) 12. ├─shinydashboard::tabItems(...) 13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane") 14. └─biodosetools:::dashboard_home() 15. ├─shinydashboard::tabItem(...) 16. │ └─htmltools::div(...) 17. │ └─rlang::dots_list(...) 18. ├─htmltools::div(...) 19. │ └─rlang::dots_list(...) 20. └─htmltools::includeMarkdown(...) 21. └─markdown::mark(path, output = NULL) 22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 24. └─base::file(con, "w") [ FAIL 1 | WARN 1 | SKIP 1 | PASS 455 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 3.6.2
Check: tests
Result: ERROR Running ‘testthat.R’ [18s/27s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biodosetools) Loading required package: shiny Loading required package: golem > > test_check("biodosetools") ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead number of iterations= 43 ! Problem with `glm()` -> constraint ML optimization will be used instead ! Problem with `glm()` -> constraint ML optimization will be used instead [ FAIL 1 | WARN 1 | SKIP 1 | PASS 455 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:71:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-golem-recommended.R:2:3'): app ui ────────────────────────────── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3 2. ├─htmltools::tagList(...) 3. │ └─rlang::dots_list(...) 4. ├─shinydashboard::dashboardPage(...) 5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper") 6. └─biodosetools:::dashboard_body() 7. ├─shinydashboard::dashboardBody(...) 8. │ ├─htmltools::div(...) 9. │ │ └─rlang::dots_list(...) 10. │ └─tags$section(class = "content", ...) 11. │ └─rlang::dots_list(...) 12. ├─shinydashboard::tabItems(...) 13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane") 14. └─biodosetools:::dashboard_home() 15. ├─shinydashboard::tabItem(...) 16. │ └─htmltools::div(...) 17. │ └─rlang::dots_list(...) 18. ├─htmltools::div(...) 19. │ └─rlang::dots_list(...) 20. └─htmltools::includeMarkdown(...) 21. └─markdown::mark(path, output = NULL) 22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 24. └─base::file(con, "w") [ FAIL 1 | WARN 1 | SKIP 1 | PASS 455 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64