CRAN Package Check Results for Maintainer Guangchuang Yu <guangchuangyu at gmail.com>

CRAN Package Check Results for Maintainer ‘Guangchuang Yu <guangchuangyu at gmail.com>’

Last updated on 2026-03-07 04:50:30 CET.

Package	ERROR	NOTE	OK
aplot			14
aplotExtra			14
badger			14
dlstats			14
emojifont			14
enrichit			14
fanyi			14
ggbreak			14
ggfun			14
ggimage			14
gglycan			14
ggplotify			14
ggtangle			14
gson			14
hexSticker			14
ivolcano	3	3	8
meme			14
mirrorselect			14
plotbb			14
rvcheck			14
scatterpie			14
scholar			14
seqmagick	2	1	11
shadowtext			14
shinyTempSignal		11	3
TDbook		2	12
tidydr			14
tidytree			14
wget			14
wikiprofiler			14
yulab.utils			14

Package aplot

Current CRAN status: OK: 14

Package badger

Current CRAN status: OK: 14

Package dlstats

Current CRAN status: OK: 14

Package fanyi

Current CRAN status: OK: 14

Package ggbreak

Current CRAN status: OK: 14

Package ggfun

Current CRAN status: OK: 14

Package ggimage

Current CRAN status: OK: 14

Package gglycan

Current CRAN status: OK: 14

Package gson

Current CRAN status: OK: 14

Package ivolcano

Current CRAN status: ERROR: 3, NOTE: 3, OK: 8

Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘ivolcano.qmd’ using html <1b>[31m processing file: ivolcano.qmd <1b>[39m<1b>[31mError in `library()`: ! there is no package called 'org.Hs.eg.db' Backtrace: ▆ 1. └─base::library(org.Hs.eg.db) <1b>[39m<1b>[31m Quitting from ivolcano.qmd:25-29 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[39m<1b>[31m~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'org.Hs.eg.db' --- Backtrace: ▆ 1. └�<1b>[39m<1b>[31m��base::library(org.Hs.eg.db) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[39m<1b>[31mExecution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'ivolcano.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: ivolcano.qmd <1b>[31mError in `library()`:<1b>[39m ! there is no package called 'org.Hs.eg.db' Backtrace: ▆ 1. └─base::library(org.Hs.eg.db) Quitting from ivolcano.qmd:25-29 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[31m~~~~~~~~~~<1b>[39m <error/rlang_error> Error in `library()`: ! there is no package called 'org.Hs.eg.db' --- Backtrace: ▆ 1. └�<1b>[31m��base::library(org.Hs.eg.db)<1b>[39m ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[31mExecution halted<1b>[39m <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error: ! System command 'quarto' failed --- failed re-building ‘ivolcano.qmd’ SUMMARY: processing the following file failed: ‘ivolcano.qmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘ivolcano.qmd’ using html <1b>[31m processing file: ivolcano.qmd <1b>[39m<1b>[31mError in `library()`: ! there is no package called 'org.Hs.eg.db' Backtrace: ▆ 1. └─base::library(org.Hs.eg.db) <1b>[39m<1b>[31m Quitting from ivolcano.qmd:25-29 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[39m<1b>[31m~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'org.Hs.eg.db' --- Backtrace: ▆ 1. └─base::library(org.Hs.eg.db) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'ivolcano.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: ivolcano.qmd <1b>[31mError in `library()`:<1b>[39m ! there is no package called 'org.Hs.eg.db' Backtrace: ▆ 1. └─base::library(org.Hs.eg.db) Quitting from ivolcano.qmd:25-29 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[31m~~~~~~~~~~<1b>[39m <error/rlang_error> Error in `library()`: ! there is no package called 'org.Hs.eg.db' --- Backtrace: ▆ 1. └─base::library(org.Hs.eg.db) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error: ! System command 'quarto' failed --- failed re-building ‘ivolcano.qmd’ SUMMARY: processing the following file failed: ‘ivolcano.qmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘ivolcano.qmd’ using html <1b>[31m processing file: ivolcano.qmd <1b>[39m<1b>[31mError in `library()`: ! there is no package called 'clusterProfiler' Backtrace: ▆ 1. └─base::library(clusterProfiler)<1b>[39m<1b>[31m <1b>[39m<1b>[31m Quitting from ivolcano.qmd:277-324 [pathway-volcano-linkage] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[39m<1b>[31m~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'clusterProfiler' --- Backtrace: ▆ 1. └─base::library(clusterProfiler) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[39m<1b>[31mExecution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'ivolcano.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: ivolcano.qmd <1b>[31mError in `library()`:<1b>[39m ! there is no package called 'clusterProfiler' Backtrace: ▆ 1. └─base::library(clusterProfiler) Quitting from ivolcano.qmd:277-324 [pathway-volcano-linkage] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[31m~~~~~~~~~~~~~~~~~~~~<1b>[39m <error/rlang_error> Error in `library()`: ! there is no package called 'clusterProfiler' --- Backtrace: ▆ 1. └─base::library(clusterProfiler) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[31mExecution halted<1b>[39m <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error: ! System command 'quarto' failed --- failed re-building ‘ivolcano.qmd’ SUMMARY: processing the following file failed: ‘ivolcano.qmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.0.5
Check: installed package size
Result: NOTE installed size is 41.7Mb sub-directories of 1Mb or more: doc 40.6Mb extdata 1.0Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package meme

Current CRAN status: OK: 14

Package mirrorselect

Current CRAN status: OK: 14

Package plotbb

Current CRAN status: OK: 14

Package rvcheck

Current CRAN status: OK: 14

Package scatterpie

Current CRAN status: OK: 14

Package scholar

Current CRAN status: OK: 14

Package seqmagick

Current CRAN status: ERROR: 2, NOTE: 1, OK: 11

Version: 0.1.8
Check: package dependencies
Result: ERROR Package required but not available: ‘Biostrings’ Packages suggested but not available for checking: 'GenomicAlignments', 'muscle', 'Rsamtools' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.8
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘muscle’ Flavor: r-oldrel-macos-arm64

Package shadowtext

Current CRAN status: OK: 14

Package shinyTempSignal

Current CRAN status: NOTE: 11, OK: 3

Version: 0.0.8
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘app_server.R’ ‘function.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package TDbook

Current CRAN status: NOTE: 2, OK: 12

Version: 0.0.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package tidydr

Current CRAN status: OK: 14

Package tidytree

Current CRAN status: OK: 14

Package wget

Current CRAN status: OK: 14

Package wikiprofiler

Current CRAN status: OK: 14

Package yulab.utils

Current CRAN status: OK: 14