Last updated on 2025-12-14 04:50:31 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/119s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.667, system: 0.072, elapsed: 2.346 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.472, system: 0.175, elapsed: 11.215 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.019, elapsed: 0.316 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.091, system: 0.287, elapsed: 5.999 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.009, elapsed: 0.262 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.182, system: 0.595, elapsed: 21.021 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.745, system: 0.080, elapsed: 2.641 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.857, system: 0.267, elapsed: 14.894 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.018, elapsed: 0.312 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.240, system: 0.283, elapsed: 6.774 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.010, elapsed: 0.269 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.783, system: 0.691, elapsed: 25.738 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.807, system: 0.082, elapsed: 2.497 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.613, system: 0.190, elapsed: 12.310 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.012, elapsed: 0.209 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.923, system: 0.255, elapsed: 4.950 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.018, elapsed: 0.227 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.215, system: 0.270, elapsed: 1.018 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.573, system: 0.870, elapsed: 22.144 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.694, system: 0.079, elapsed: 2.031 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.899, system: 0.401, elapsed: 14.587 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.017, elapsed: 0.240 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.042, system: 0.270, elapsed: 6.372 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.005, elapsed: 0.256 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.812, system: 0.521, elapsed: 18.809 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.468, system: 1.326, elapsed: 43.135 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/148s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.791, system: 0.077, elapsed: 3.361 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.801, system: 0.192, elapsed: 17.939 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.016, elapsed: 0.362 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.809, system: 0.204, elapsed: 5.859 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.005, elapsed: 0.241 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.380, system: 0.525, elapsed: 28.780 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.603, system: 0.036, elapsed: 2.016 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.876, system: 0.330, elapsed: 18.965 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.017, elapsed: 0.304 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.918, system: 0.235, elapsed: 8.285 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.263 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.335, system: 0.658, elapsed: 30.640 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.633, system: 0.044, elapsed: 3.073 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.620, system: 0.082, elapsed: 17.058 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.011, elapsed: 0.309 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.787, system: 0.188, elapsed: 7.376 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.003, elapsed: 0.343 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.130, system: 0.261, elapsed: 1.462 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.186, system: 0.623, elapsed: 30.767 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.648, system: 0.038, elapsed: 3.496 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.587, system: 0.093, elapsed: 17.218 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.012, elapsed: 0.407 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.775, system: 0.188, elapsed: 6.319 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.236 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.761, system: 0.515, elapsed: 19.716 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.792, system: 0.876, elapsed: 48.710 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64