Last updated on 2025-10-16 05:51:47 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/133s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.550, system: 0.054, elapsed: 2.082 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.946, system: 0.112, elapsed: 10.769 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.016, elapsed: 0.252 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.698, system: 0.217, elapsed: 4.536 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.005, elapsed: 0.211 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.094, system: 0.433, elapsed: 18.674 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.481, system: 0.048, elapsed: 1.916 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.254, system: 0.236, elapsed: 17.399 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.017, elapsed: 0.337 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.956, system: 0.269, elapsed: 6.032 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.008, elapsed: 0.222 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.579, system: 0.607, elapsed: 26.601 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.697, system: 0.074, elapsed: 2.764 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.209, system: 0.237, elapsed: 15.452 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.013, elapsed: 0.553 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.834, system: 0.218, elapsed: 10.072 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.005, elapsed: 0.436 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.177, system: 0.220, elapsed: 1.975 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.894, system: 0.796, elapsed: 32.622 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.542, system: 0.048, elapsed: 4.051 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.069, system: 0.100, elapsed: 17.548 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.013, elapsed: 0.347 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.842, system: 0.235, elapsed: 6.671 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.010, elapsed: 0.329 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.736, system: 0.862, elapsed: 17.196 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.201, system: 1.301, elapsed: 47.491 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.532, system: 0.046, elapsed: 2.189 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.878, system: 0.124, elapsed: 10.311 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.013, elapsed: 0.233 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.706, system: 0.233, elapsed: 5.554 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.011, elapsed: 0.248 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.001, system: 0.451, elapsed: 19.181 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.748, system: 0.090, elapsed: 2.696 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.129, system: 0.267, elapsed: 12.103 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.179, system: 0.012, elapsed: 0.199 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.807, system: 0.254, elapsed: 4.680 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.012, elapsed: 0.265 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.569, system: 0.679, elapsed: 20.676 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.628, system: 0.062, elapsed: 2.182 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.211, system: 0.266, elapsed: 12.218 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.178, system: 0.010, elapsed: 0.190 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.648, system: 0.247, elapsed: 4.620 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.017, elapsed: 0.234 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.074, system: 0.254, elapsed: 0.926 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.534, system: 0.899, elapsed: 21.192 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.707, system: 0.082, elapsed: 2.102 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.296, system: 0.361, elapsed: 12.379 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.179, system: 0.012, elapsed: 0.385 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.576, system: 0.171, elapsed: 9.869 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.005, elapsed: 0.429 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.084, system: 0.471, elapsed: 19.713 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.657, system: 1.136, elapsed: 46.001 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64