Last updated on 2026-01-13 04:50:56 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/240s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.534, system: 0.039, elapsed: 3.623 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.566, system: 0.083, elapsed: 14.563 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.018, elapsed: 0.941 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.826, system: 0.701, elapsed: 32.320 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.173 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.890, system: 0.868, elapsed: 52.660 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.526, system: 0.031, elapsed: 2.107 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.502, system: 0.078, elapsed: 12.520 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.015, elapsed: 0.873 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.773, system: 0.678, elapsed: 23.253 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.178 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.760, system: 0.826, elapsed: 39.611 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.599, system: 0.035, elapsed: 2.212 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.372, system: 0.049, elapsed: 10.911 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.313, system: 0.015, elapsed: 0.554 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.895, system: 0.716, elapsed: 14.469 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.006, elapsed: 0.175 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.209, system: 0.347, elapsed: 0.954 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.379, system: 1.218, elapsed: 30.178 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.547, system: 0.043, elapsed: 1.584 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.299, system: 0.051, elapsed: 10.862 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.016, elapsed: 0.600 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.560, system: 0.711, elapsed: 66.355 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.004, elapsed: 0.215 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.703, system: 0.658, elapsed: 27.971 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.301, system: 1.527, elapsed: 108.362 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/138s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.621, system: 0.035, elapsed: 2.596 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.620, system: 0.063, elapsed: 18.474 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.016, elapsed: 0.444 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.304, system: 0.424, elapsed: 8.384 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.282 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.520, system: 0.565, elapsed: 31.250 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.533, system: 0.027, elapsed: 2.667 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.523, system: 0.055, elapsed: 17.066 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.014, elapsed: 0.332 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.229, system: 0.394, elapsed: 6.976 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.004, elapsed: 0.286 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.221, system: 0.516, elapsed: 28.270 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.552, system: 0.027, elapsed: 2.333 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.624, system: 0.054, elapsed: 14.128 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.012, elapsed: 0.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.268, system: 0.394, elapsed: 6.948 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.006, elapsed: 0.319 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.200, system: 0.324, elapsed: 1.319 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.693, system: 0.842, elapsed: 26.405 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.578, system: 0.032, elapsed: 2.321 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.660, system: 0.065, elapsed: 14.911 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.013, elapsed: 0.354 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.293, system: 0.428, elapsed: 7.680 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.277 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.750, system: 0.534, elapsed: 17.209 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.325, system: 1.097, elapsed: 43.892 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64