Last updated on 2025-09-15 05:50:30 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/157s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.470, system: 0.036, elapsed: 4.168 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.970, system: 0.055, elapsed: 20.433 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.013, elapsed: 0.377 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.757, system: 0.188, elapsed: 7.002 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.297 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.088, system: 0.318, elapsed: 33.592 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.458, system: 0.029, elapsed: 2.494 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.955, system: 0.070, elapsed: 15.673 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.425 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.678, system: 0.159, elapsed: 6.158 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.295 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.986, system: 0.294, elapsed: 25.999 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.518, system: 0.030, elapsed: 2.607 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.018, system: 0.083, elapsed: 16.713 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.580 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.754, system: 0.188, elapsed: 10.852 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.466 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.183, system: 0.232, elapsed: 1.930 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.433, system: 0.569, elapsed: 34.599 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.443, system: 0.029, elapsed: 4.230 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.026, system: 0.082, elapsed: 21.329 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.013, elapsed: 0.375 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.742, system: 0.176, elapsed: 6.726 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.243 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.276, system: 0.467, elapsed: 17.237 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.485, system: 0.803, elapsed: 51.705 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/117s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.538, system: 0.042, elapsed: 2.932 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.917, system: 0.070, elapsed: 14.283 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.014, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.455, system: 0.176, elapsed: 4.551 seconds]
Computing values for grid cells...
... done. [user: 0.156, system: 0.004, elapsed: 0.199 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.776, system: 0.325, elapsed: 23.201 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.418, system: 0.030, elapsed: 1.562 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.878, system: 0.093, elapsed: 13.184 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.012, elapsed: 0.361 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.661, system: 0.163, elapsed: 6.320 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.289 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.832, system: 0.325, elapsed: 22.513 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.533, system: 0.034, elapsed: 2.003 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.916, system: 0.099, elapsed: 13.285 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.010, elapsed: 0.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.600, system: 0.178, elapsed: 6.518 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.007, elapsed: 0.174 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.055, system: 0.228, elapsed: 1.065 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.077, system: 0.587, elapsed: 24.314 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.483, system: 0.031, elapsed: 1.704 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.000, system: 0.071, elapsed: 10.880 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.011, elapsed: 0.285 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.632, system: 0.177, elapsed: 5.569 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.006, elapsed: 0.272 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.033, system: 0.534, elapsed: 18.867 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.157, system: 0.859, elapsed: 38.506 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64