Last updated on 2026-03-07 04:50:43 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [110s/333s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.539, system: 0.039, elapsed: 1.772 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.657, system: 0.068, elapsed: 13.442 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.019, elapsed: 0.753 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.999, system: 0.756, elapsed: 52.957 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.176 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.177, system: 0.912, elapsed: 69.816 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.499, system: 0.037, elapsed: 1.757 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.667, system: 0.053, elapsed: 12.024 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.018, elapsed: 0.704 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.883, system: 0.754, elapsed: 76.806 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.002, elapsed: 0.192 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.001, system: 0.882, elapsed: 92.099 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.563, system: 0.035, elapsed: 2.664 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.604, system: 0.073, elapsed: 17.844 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.313, system: 0.017, elapsed: 1.381 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.827, system: 0.802, elapsed: 94.400 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.008, elapsed: 0.220 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.280, system: 0.285, elapsed: 1.179 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.419, system: 1.254, elapsed: 118.841 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.624, system: 0.062, elapsed: 2.655 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.755, system: 0.140, elapsed: 13.591 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.015, elapsed: 0.280 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.930, system: 0.842, elapsed: 17.544 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.004, elapsed: 0.175 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 19.665, system: 1.602, elapsed: 11.139 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 40.263, system: 2.717, elapsed: 46.365 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/422s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.559, system: 0.041, elapsed: 2.051 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.576, system: 0.053, elapsed: 13.076 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.018, elapsed: 1.033 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.734, system: 0.735, elapsed: 61.998 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.003, elapsed: 0.208 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.835, system: 0.872, elapsed: 79.151 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.650, system: 0.034, elapsed: 2.513 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.588, system: 0.083, elapsed: 14.554 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.016, elapsed: 0.822 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.779, system: 0.856, elapsed: 132.288 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.003, elapsed: 0.171 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.969, system: 1.011, elapsed: 151.175 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.608, system: 0.038, elapsed: 2.927 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.410, system: 0.054, elapsed: 13.264 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.015, elapsed: 1.082 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.600, system: 0.719, elapsed: 56.619 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.006, elapsed: 0.177 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.234, system: 0.324, elapsed: 1.028 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.892, system: 1.182, elapsed: 76.001 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.583, system: 0.036, elapsed: 1.686 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.663, system: 0.072, elapsed: 12.074 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.015, elapsed: 0.853 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.773, system: 0.770, elapsed: 77.230 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.003, elapsed: 0.172 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 13.367, system: 0.795, elapsed: 16.353 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 32.439, system: 1.723, elapsed: 109.129 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64