Last updated on 2026-03-07 04:50:44 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| ATR | 14 | |||
| basefun | 14 | |||
| coin | 14 | |||
| exactRankTests | 1 | 13 | ||
| HSAUR | 14 | |||
| HSAUR2 | 14 | |||
| HSAUR3 | 14 | |||
| inum | 14 | |||
| ipred | 14 | |||
| libcoin | 14 | |||
| maxstat | 14 | |||
| mboost | 14 | |||
| mlt | 14 | |||
| mlt.docreg | 2 | 12 | ||
| modeltools | 14 | |||
| multcomp | 2 | 12 | ||
| MVA | 14 | |||
| mvtnorm | 14 | |||
| party | 14 | |||
| partykit | 3 | 11 | ||
| tbm | 2 | 12 | ||
| TH.data | 3 | 11 | ||
| tram | 1 | 1 | 12 | |
| trtf | 14 | |||
| variables | 14 |
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, OK: 13
Version: 0.8-35
Check: tests
Result: ERROR
Running ‘bugfix-tests.R’ [0s/0s]
Comparing ‘bugfix-tests.Rout’ to ‘bugfix-tests.Rout.save’ ... OK
Running ‘dtest.R’ [1s/2s]
Running ‘reg-tests.R’ [0s/1s]
Running ‘stest.R’ [2s/3s]
Running the tests in ‘tests/reg-tests.R’ failed.
Complete output:
>
> require("exactRankTests")
Loading required package: exactRankTests
Package 'exactRankTests' is no longer under development.
Please consider using package 'coin' instead.
> suppressWarnings(RNGversion("3.5.3"))
> set.seed(29081975)
>
> #
> # Regression tests
> #
>
> # Blood Pressure data: Results from StatXact 5 (demo version)
>
> data(bloodp)
> # bloodp$group <- factor(c(rep("Behandlung", 4), rep("Kontrolle", 11)))
>
> we <- wilcox.exact(bp ~ group, data=bloodp, conf.int=TRUE)
> we
Exact Wilcoxon rank sum test
data: bp by group
W = 35, p-value = 0.0989
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-4 22
sample estimates:
difference in location
9.5
> stopifnot(round(we$p.value,4) == 0.0989)
> stopifnot(we$conf.int[1] == -4)
> stopifnot(we$conf.int[2] == 22)
> stopifnot(we$conf.estimate == 9.5)
>
> we <- wilcox.exact(bp ~ group, data=bloodp, conf.int=TRUE, exact=FALSE)
> we
Asymptotic Wilcoxon rank sum test
data: bp by group
W = 35, p-value = 0.08535
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-4.143776e-05 2.000007e+01
sample estimates:
difference in location
9.790799
> stopifnot(round(we$p.value,4) == 0.0853)
>
> we <- wilcox.exact(bp ~ group, data=bloodp, alternative="greater", conf.int=TRUE)
> stopifnot(round(we$p.value,4) == 0.0542)
>
>
> pt <- perm.test(bp ~ group, data=bloodp)
> pt
2-sample Permutation Test
data: bp by group
T = 402, p-value = 0.104
alternative hypothesis: true mu is not equal to 0
> stopifnot(round(pt$p.value, 4) == 0.1040)
>
> pt <- perm.test(bp ~ group, data=bloodp, alternative="greater")
> pt
2-sample Permutation Test
data: bp by group
T = 402, p-value = 0.05641
alternative hypothesis: true mu is greater than 0
> stopifnot(round(pt$p.value, 4) == 0.0564)
>
> pt <- perm.test(bp ~ group, data=bloodp, exact=FALSE)
> pt
Asymptotic 2-sample Permutation Test
data: bp by group
T = 402, p-value = 0.107
alternative hypothesis: true mu is not equal to 0
> stopifnot(round(pt$p.value, 4) == 0.1070)
>
> sc <- cscores(bloodp$bp, type="NormalQuantile")
> X <- sum(sc[bloodp$group == "group2"])
> stopifnot(round(pperm(X, sc, 11), 4) == 0.0462)
> stopifnot(round(pperm(X, sc, 11, alternative="two.sided"), 4) == 0.0799)
>
> # use scores mapped into integers
>
> sc <- cscores(bloodp$bp, type="NormalQuantile", int=TRUE)
> X <- sum(sc[bloodp$group == "group2"])
> stopifnot(round(pperm(X, sc, 11), 4) == 0.0462)
> stopifnot(round(pperm(X, sc, 11, alternative="two.sided"), 4) == 0.0799)
>
> # Equality of wilcox.test in package ctest and wilcox.exact
>
> x <- c(1.83, 0.50, 1.62, 2.48, 1.68, 1.88, 1.55, 3.06, 1.30)
> y <- c(0.878, 0.647, 0.598, 2.05, 1.06, 1.29, 1.06, 3.14, 1.29)
>
> wt <- wilcox.test(y-x)
> we <- wilcox.exact(y -x)
> wt
Wilcoxon signed rank exact test
data: y - x
V = 5, p-value = 0.03906
alternative hypothesis: true location is not equal to 0
> we
Exact Wilcoxon signed rank test
data: y - x
V = 5, p-value = 0.03906
alternative hypothesis: true mu is not equal to 0
> stopifnot(wt$p.value == we$p.value)
>
> x <- c(0.80, 0.83, 1.89, 1.04, 1.45, 1.38, 1.91, 1.64, 0.73, 1.46)
> y <- c(1.15, 0.88, 0.90, 0.74, 1.21)
> we <- wilcox.exact(x, y, alternative = "g") # greater
> wt <- wilcox.test(x, y, alternative = "g")
> stopifnot(we$p.value == wt$p.value)
> stopifnot(all(we$conf.int == wt$conf.int))
>
> x <- rnorm(10)
> y <- rnorm(10, 2)
> wilcox.exact(x, y, conf.int = TRUE)
Exact Wilcoxon rank sum test
data: x and y
W = 13, p-value = 0.003886
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-2.6984506 -0.5996612
sample estimates:
difference in location
-2.07512
>
> if (!any(duplicated(c(x,y)))) {
+ we <- wilcox.exact(x, y, conf.int = TRUE)
+ print(we)
+ wt <- wilcox.test(x, y, conf.int = TRUE)
+ print(wt)
+ we$pointprob <- NULL
+ we$method <- NULL
+ we$null.value <- NULL
+ wt$parameter <- NULL
+ wt$method <- NULL
+ wt$null.value <- NULL
+ stopifnot(all.equal(wt, we))
+ we <- wilcox.exact(x, conf.int = TRUE)
+ print(we)
+ wt <- wilcox.test(x, conf.int = TRUE)
+ print(wt)
+ we$pointprob <- NULL
+ we$method <- NULL
+ we$null.value <- NULL
+ wt$parameter <- NULL
+ wt$method <- NULL
+ wt$null.value <- NULL
+ stopifnot(all.equal(wt, we))
+ }
Exact Wilcoxon rank sum test
data: x and y
W = 13, p-value = 0.003886
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-2.6984506 -0.5996612
sample estimates:
difference in location
-2.07512
Wilcoxon rank sum exact test
data: x and y
W = 13, p-value = 0.003886
alternative hypothesis: true location shift is not equal to 0
95.67429 percent confidence interval:
-2.6984506 -0.5996612
sample estimates:
difference in location
-2.07512
Error: wt and we are not equal:
Component "conf.int": Attributes: < Component "conf.level": Mean relative difference: 0.007047815 >
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: WARN: 2, OK: 12
Version: 1.1-12
Check: tests
Result: NOTE
Running ‘AFT-Ex.R’ [1s/1s]
Comparing ‘AFT-Ex.Rout’ to ‘AFT-Ex.Rout.save’ ...179c179
< 1.0000 -0.3657 0.6942 1.1191
---
> 1.0000 -0.3657 0.6942 1.1192
Running ‘GBSG2.R’ [1s/1s]
Running ‘KM-Ex.R’ [1s/1s]
Comparing ‘KM-Ex.Rout’ to ‘KM-Ex.Rout.save’ ... OK
Running ‘faithful.R’ [1s/1s]
Comparing ‘faithful.Rout’ to ‘faithful.Rout.save’ ... OK
Running ‘orm-Ex.R’ [8s/5s]
Comparing ‘orm-Ex.Rout’ to ‘orm-Ex.Rout.save’ ... OK
Running ‘timedep_covar.R’ [1s/1s]
Comparing ‘timedep_covar.Rout’ to ‘timedep_covar.Rout.save’ ... OK
Running ‘truncreg-Ex.R’ [1s/1s]
Comparing ‘truncreg-Ex.Rout’ to ‘truncreg-Ex.Rout.save’ ... OK
Flavor: r-release-macos-arm64
Version: 1.1-12
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘mlt.Rnw’ using knitr
trying URL 'https://zenodo.org/record/17179/files/DVC.tgz'
Content type 'application/octet-stream' length 2292581 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
2025-12-09 06:37:02.773 R[94880:726293] XType: Using static font registry.
Error: processing vignette 'mlt.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'mlt.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{rotating}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘mlt.Rnw’
SUMMARY: processing the following file failed:
‘mlt.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 1.1-12
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘mlt.Rnw’ using knitr
trying URL 'https://zenodo.org/record/17179/files/DVC.tgz'
Content type 'application/octet-stream' length 2292581 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
2025-12-09 06:27:49.496 R[27606:333961] XType: Using static font registry.
Error: processing vignette 'mlt.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'mlt.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{rotating}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘mlt.Rnw’
SUMMARY: processing the following file failed:
‘mlt.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 14
Current CRAN status: WARN: 2, OK: 12
Version: 1.4-29
Check: package subdirectories
Result: WARN
Subdirectory 'demo' contains invalid file names:
‘Ch_Appl.Rout.save’ ‘Ch_GLM.Rout.save’ ‘Ch_Intro.Rout.save’
‘Ch_Misc.Rout.save’ ‘Ch_Theory.Rout.save’
Please remove or rename the files.
See section ‘Package subdirectories’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: NOTE: 3, OK: 11
Version: 1.2-25
Check: tests
Result: NOTE
Running ‘bugfixes.R’ [6s/7s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ... OK
Running ‘constparty.R’ [5s/6s]
Comparing ‘constparty.Rout’ to ‘constparty.Rout.save’ ... OK
Running ‘regtest-MIA.R’ [2s/3s]
Comparing ‘regtest-MIA.Rout’ to ‘regtest-MIA.Rout.save’ ... OK
Running ‘regtest-cforest.R’ [13s/18s]
Comparing ‘regtest-cforest.Rout’ to ‘regtest-cforest.Rout.save’ ... OK
Running ‘regtest-ctree.R’ [2s/3s]
Comparing ‘regtest-ctree.Rout’ to ‘regtest-ctree.Rout.save’ ... OK
Running ‘regtest-glmtree.R’ [36s/37s]
Comparing ‘regtest-glmtree.Rout’ to ‘regtest-glmtree.Rout.save’ ... OK
Running ‘regtest-honesty.R’ [2s/4s]
Running ‘regtest-lmtree.R’ [3s/3s]
Running ‘regtest-nmax.R’ [2s/2s]
Comparing ‘regtest-nmax.Rout’ to ‘regtest-nmax.Rout.save’ ... OK
Running ‘regtest-node.R’ [2s/2s]
Comparing ‘regtest-node.Rout’ to ‘regtest-node.Rout.save’ ... OK
Running ‘regtest-party-random.R’ [3s/3s]
Running ‘regtest-party.R’ [2s/3s]
Comparing ‘regtest-party.Rout’ to ‘regtest-party.Rout.save’ ...
52,54c52,57
< Warning message:
< In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
< there is no package called 'RWeka'
---
> [1] TRUE
> [1] "names for current but not for target"
> [1] TRUE
> [1] TRUE
> [1] TRUE
> [1] TRUE
1383,1392c1386,1395
< 1 1989 0.4841861
< 2 1701 0.4934019
< 3 1701 0.4934019
< 4 1701 0.4934019
< 5 1989 0.4841861
< 6 500 0.5053642
< 7 Inf 0.4755246
< 8 Inf 0.4927613
< 9 500 0.5053642
< 10 742 0.4963365
---
> 1 1989 0.5017739
> 2 1701 0.4933225
> 3 1701 0.4933225
> 4 1701 0.4933225
> 5 1989 0.5017739
> 6 500 0.4823559
> 7 Inf 0.4662471
> 8 Inf 0.4839262
> 9 500 0.4823559
> 10 742 0.5108953
1565c1568
< 2 2 2 2 3 3 3 3 3
---
> 2 2 2 2 2 4 4 4 5
1568c1571
< 2.0083 2.0083 2.0083 2.0083 -0.0955 -0.0955 -0.0955 -0.0955 -0.0955
---
> 2.112 2.112 2.112 2.112 2.112 0.378 0.378 0.378 -0.511
1573c1576
< x[1:52] = -1, 0.4, 0.6, ..., 4, 5
---
> x[1:58] = -0.3, -0.1, 0.1, ..., 4, 4
1578c1581
< x[1:52] = -1, 0.4, 0.6, ..., 4, 5
---
> x[1:58] = -0.3, -0.1, 0.1, ..., 4, 4
1583c1586
< x[1:52] = -1, 0.4, 0.6, ..., 4, 5
---
> x[1:58] = -0.3, -0.1, 0.1, ..., 4, 4
1588c1591
< x[1:52] = -1, 0.4, 0.6, ..., 4, 5
---
> x[1:58] = -0.3, -0.1, 0.1, ..., 4, 4
1593c1596
< x[1:48] = -3, -2, -2, ..., 2, 3
---
> x[1:58] = -0.3, -0.1, 0.1, ..., 4, 4
1598c1601
< x[1:48] = -3, -2, -2, ..., 2, 3
---
> x[1:26] = -1, -0.7, -0.7, ..., 2, 2
1603c1606
< x[1:48] = -3, -2, -2, ..., 2, 3
---
> x[1:26] = -1, -0.7, -0.7, ..., 2, 2
1608c1611
< x[1:48] = -3, -2, -2, ..., 2, 3
---
> x[1:26] = -1, -0.7, -0.7, ..., 2, 2
1613c1616
< x[1:48] = -3, -2, -2, ..., 2, 3
---
> x[1:16] = -2, -2, -2, ..., 0.7, 1
1617,1625c1620,1628
< 1 0.608 1.8176 3.77
< 2 0.608 1.8176 3.77
< 3 0.608 1.8176 3.77
< 4 0.608 1.8176 3.77
< 5 -1.441 -0.0368 1.22
< 6 -1.441 -0.0368 1.22
< 7 -1.441 -0.0368 1.22
< 8 -1.441 -0.0368 1.22
< 9 -1.441 -0.0368 1.22
---
> 1 1.064 2.126 3.254
> 2 1.064 2.126 3.254
> 3 1.064 2.126 3.254
> 4 1.064 2.126 3.254
> 5 1.064 2.126 3.254
> 6 -0.534 0.396 1.361
> 7 -0.534 0.396 1.361
> 8 -0.534 0.396 1.361
> 9 -1.659 -0.383 0.485
1702,1710c1705,1713
< 1 0.0757 0.0954 0.117 0.140 0.163 0.186 0.209 0.232 0.253
< 2 0.0757 0.0954 0.117 0.140 0.163 0.186 0.209 0.232 0.253
< 3 0.0757 0.0954 0.117 0.140 0.163 0.186 0.209 0.232 0.253
< 4 0.0757 0.0954 0.117 0.140 0.163 0.186 0.209 0.232 0.253
< 5 0.3268 0.3266 0.325 0.321 0.314 0.304 0.292 0.277 0.260
< 6 0.3268 0.3266 0.325 0.321 0.314 0.304 0.292 0.277 0.260
< 7 0.3268 0.3266 0.325 0.321 0.314 0.304 0.292 0.277 0.260
< 8 0.3268 0.3266 0.325 0.321 0.314 0.304 0.292 0.277 0.260
< 9 0.3268 0.3266 0.325 0.321 0.314 0.304 0.292 0.277 0.260
---
> 1 0.0501 0.0493 0.0508 0.0565 0.0678 0.0854 0.109 0.138 0.169
> 2 0.0501 0.0493 0.0508 0.0565 0.0678 0.0854 0.109 0.138 0.169
> 3 0.0501 0.0493 0.0508 0.0565 0.0678 0.0854 0.109 0.138 0.169
> 4 0.0501 0.0493 0.0508 0.0565 0.0678 0.0854 0.109 0.138 0.169
> 5 0.0501 0.0493 0.0508 0.0565 0.0678 0.0854 0.109 0.138 0.169
> 6 0.5393 0.5764 0.5965 0.5940 0.5639 0.5057 0.429 0.350 0.290
> 7 0.5393 0.5764 0.5965 0.5940 0.5639 0.5057 0.429 0.350 0.290
> 8 0.5393 0.5764 0.5965 0.5940 0.5639 0.5057 0.429 0.350 0.290
> 9 0.3705 0.3422 0.3106 0.2778 0.2458 0.2160 0.189 0.166 0.145
Running ‘regtest-split.R’ [2s/2s]
Comparing ‘regtest-split.Rout’ to ‘regtest-split.Rout.save’ ... OK
Running ‘regtest-weights.R’ [2s/3s]
Comparing ‘regtest-weights.Rout’ to ‘regtest-weights.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2-25
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘constparty.Rnw’ due to unavailable dependencies: 'RWeka'
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2-26
Check: tests
Result: NOTE
Running ‘bugfixes.R’ [1s/1s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ...
1143c1143
< criterion -0.0004771838 -0.0004771838
---
> criterion -0.0001771838 -0.0001771838
Running ‘constparty.R’ [1s/1s]
Comparing ‘constparty.Rout’ to ‘constparty.Rout.save’ ... OK
Running ‘regtest-MIA.R’ [0s/0s]
Comparing ‘regtest-MIA.Rout’ to ‘regtest-MIA.Rout.save’ ... OK
Running ‘regtest-cforest.R’ [2s/2s]
Comparing ‘regtest-cforest.Rout’ to ‘regtest-cforest.Rout.save’ ... OK
Running ‘regtest-ctree.R’ [0s/0s]
Comparing ‘regtest-ctree.Rout’ to ‘regtest-ctree.Rout.save’ ... OK
Running ‘regtest-glmtree.R’ [9s/9s]
Comparing ‘regtest-glmtree.Rout’ to ‘regtest-glmtree.Rout.save’ ... OK
Running ‘regtest-honesty.R’ [0s/0s]
Running ‘regtest-lmtree.R’ [1s/1s]
Running ‘regtest-nmax.R’ [0s/0s]
Comparing ‘regtest-nmax.Rout’ to ‘regtest-nmax.Rout.save’ ... OK
Running ‘regtest-node.R’ [0s/0s]
Comparing ‘regtest-node.Rout’ to ‘regtest-node.Rout.save’ ... OK
Running ‘regtest-party-random.R’ [1s/1s]
Running ‘regtest-party.R’ [1s/1s]
Comparing ‘regtest-party.Rout’ to ‘regtest-party.Rout.save’ ... OK
Running ‘regtest-split.R’ [0s/0s]
Comparing ‘regtest-split.Rout’ to ‘regtest-split.Rout.save’ ... OK
Running ‘regtest-weights.R’ [0s/1s]
Comparing ‘regtest-weights.Rout’ to ‘regtest-weights.Rout.save’ ... OK
Flavor: r-devel-macos-arm64
Version: 1.2-26
Check: tests
Result: NOTE
Running ‘bugfixes.R’ [1s/1s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ...1143c1143
< criterion -0.0004771838 -0.0004771838
---
> criterion -0.0001771838 -0.0001771838
Running ‘constparty.R’ [1s/1s]
Comparing ‘constparty.Rout’ to ‘constparty.Rout.save’ ... OK
Running ‘regtest-MIA.R’ [0s/1s]
Comparing ‘regtest-MIA.Rout’ to ‘regtest-MIA.Rout.save’ ... OK
Running ‘regtest-cforest.R’ [2s/2s]
Comparing ‘regtest-cforest.Rout’ to ‘regtest-cforest.Rout.save’ ... OK
Running ‘regtest-ctree.R’ [0s/0s]
Comparing ‘regtest-ctree.Rout’ to ‘regtest-ctree.Rout.save’ ... OK
Running ‘regtest-glmtree.R’ [9s/9s]
Comparing ‘regtest-glmtree.Rout’ to ‘regtest-glmtree.Rout.save’ ... OK
Running ‘regtest-honesty.R’ [0s/0s]
Running ‘regtest-lmtree.R’ [1s/1s]
Running ‘regtest-nmax.R’ [0s/0s]
Comparing ‘regtest-nmax.Rout’ to ‘regtest-nmax.Rout.save’ ... OK
Running ‘regtest-node.R’ [0s/0s]
Comparing ‘regtest-node.Rout’ to ‘regtest-node.Rout.save’ ... OK
Running ‘regtest-party-random.R’ [1s/1s]
Running ‘regtest-party.R’ [1s/1s]
Comparing ‘regtest-party.Rout’ to ‘regtest-party.Rout.save’ ... OK
Running ‘regtest-split.R’ [0s/0s]
Comparing ‘regtest-split.Rout’ to ‘regtest-split.Rout.save’ ... OK
Running ‘regtest-weights.R’ [0s/0s]
Comparing ‘regtest-weights.Rout’ to ‘regtest-weights.Rout.save’ ... OK
Flavor: r-release-macos-arm64
Current CRAN status: WARN: 2, OK: 12
Version: 0.3-10
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘tbm_supplement.Rnw’ using knitr
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
2025-12-02 22:49:48.534 R[68727:523714] XType: Using static font registry.
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
Error: processing vignette 'tbm_supplement.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'tbm_supplement.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{xcolor}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘tbm_supplement.Rnw’
SUMMARY: processing the following file failed:
‘tbm_supplement.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.3-10
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘tbm_supplement.Rnw’ using knitr
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
2025-12-02 23:14:38.843 R[45890:207220] XType: Using static font registry.
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
Error: processing vignette 'tbm_supplement.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'tbm_supplement.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{xcolor}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘tbm_supplement.Rnw’
SUMMARY: processing the following file failed:
‘tbm_supplement.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 3, OK: 11
Version: 1.1-5
Check: installed package size
Result: NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
data 1.1Mb
rda 7.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 1, NOTE: 1, OK: 12
Version: 1.4-0
Check: tests
Result: NOTE
Running ‘Coxph-Ex.R’ [7s/8s]
Comparing ‘Coxph-Ex.Rout’ to ‘Coxph-Ex.Rout.save’ ... OK
Running ‘KaplanMeier-Ex.R’ [2s/2s]
Running ‘PI_OVL-Ex.R’ [2s/3s]
Running ‘Polr-Ex.R’ [8s/10s]
Comparing ‘Polr-Ex.Rout’ to ‘Polr-Ex.Rout.save’ ... OK
Running ‘Survreg-Ex.R’ [3s/4s]
Comparing ‘Survreg-Ex.Rout’ to ‘Survreg-Ex.Rout.save’ ... OK
Running ‘bugfixes.R’ [44s/55s]
Running ‘intercepts-Ex.R’ [3s/4s]
Comparing ‘intercepts-Ex.Rout’ to ‘intercepts-Ex.Rout.save’ ... OK
Running ‘mmlt-Ex.R’ [77s/99s]
Comparing ‘mmlt-Ex.Rout’ to ‘mmlt-Ex.Rout.save’ ... OK
Running ‘mmlt-interface.R’ [24s/31s]
Running ‘mtram-Ex.R’ [6s/9s]
Comparing ‘mtram-Ex.Rout’ to ‘mtram-Ex.Rout.save’ ...
63,64d62
< attr(,"class")
< [1] "vcmat_us" "matrix" "array"
Running ‘stram-Ex.R’ [19s/24s]
Comparing ‘stram-Ex.Rout’ to ‘stram-Ex.Rout.save’ ... OK
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4-0
Check: Rd files
Result: WARN
prepare_Rd: ./man/Aareg.Rd:55: unknown macro '\bibcitet'
prepare_Rd: ./man/Aareg.Rd:56: unknown macro '\bibcitet'
checkRd: (-1) Aareg.Rd:55: Lost braces
55 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) Aareg.Rd:56: Lost braces
56 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/BoxCox.Rd:46: unknown macro '\bibcitep'
prepare_Rd: ./man/BoxCox.Rd:54: unknown macro '\bibcitet'
prepare_Rd: ./man/BoxCox.Rd:55: unknown macro '\bibcitet'
checkRd: (-1) BoxCox.Rd:46: Lost braces
46 | This is similar to a Box-Cox transformation \bibcitep{tram::BoxCox:1964}, but the technical details
| ^
checkRd: (-1) BoxCox.Rd:54: Lost braces
54 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) BoxCox.Rd:55: Lost braces
55 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Colr.Rd:58: unknown macro '\bibcitet'
prepare_Rd: ./man/Colr.Rd:59: unknown macro '\bibcitet'
checkRd: (-1) Colr.Rd:58: Lost braces
58 | \bibcitet{tram::Lohse:Rohrmann:Faeh:2017} and
| ^
checkRd: (-1) Colr.Rd:59: Lost braces
59 | \bibcitet{tram::Hothorn:Moest:Buehlmann:2017}.
| ^
prepare_Rd: ./man/Compris.Rd:77: unknown macro '\bibcitet'
prepare_Rd: ./man/Compris.Rd:78: unknown macro '\bibcitet'
prepare_Rd: ./man/Compris.Rd:79: unknown macro '\bibcitet'
checkRd: (-1) Compris.Rd:77: Lost braces
77 | regression framework described by \bibcitet{tram::Czado:Keilegom:2022} and
| ^
checkRd: (-1) Compris.Rd:78: Lost braces
78 | \bibcitet{tram::Deresa:Keilegom:2023}, the implementation here is discussed
| ^
checkRd: (-1) Compris.Rd:79: Lost braces
79 | in \bibcitet{tram::Siegfried:Tamasi:Hothorn:2026}.
| ^
prepare_Rd: ./man/Coxph.Rd:52: unknown macro '\bibcitet'
prepare_Rd: ./man/Coxph.Rd:62: unknown macro '\bibcitet'
prepare_Rd: ./man/Coxph.Rd:63: unknown macro '\bibcitet'
prepare_Rd: ./man/Coxph.Rd:64: unknown macro '\bibcitet'
checkRd: (-1) Coxph.Rd:52: Lost braces
52 | \bibcitet{tram::McLain:Ghosh:2013}.
| ^
checkRd: (-1) Coxph.Rd:62: Lost braces
62 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017},
| ^
checkRd: (-1) Coxph.Rd:63: Lost braces
63 | \bibcitet{tram::Siegfried:Tamasi:Hothorn:2026}, and
| ^
checkRd: (-1) Coxph.Rd:64: Lost braces
64 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Lehmann.Rd:44: unknown macro '\bibcitet'
checkRd: (-1) Lehmann.Rd:44: Lost braces
44 | This transformation model, introduced by \bibcitet{tram::Lehmann:1953}, uses the cumulative distribution function for the
| ^
prepare_Rd: ./man/Lm.Rd:60: unknown macro '\bibcitet'
prepare_Rd: ./man/Lm.Rd:61: unknown macro '\bibcitet'
checkRd: (-1) Lm.Rd:60: Lost braces
60 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) Lm.Rd:61: Lost braces
61 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Polr.Rd:60: unknown macro '\bibcitet'
prepare_Rd: ./man/Polr.Rd:61: unknown macro '\bibcitet'
checkRd: (-1) Polr.Rd:60: Lost braces
60 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) Polr.Rd:61: Lost braces
61 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Survreg.Rd:66: unknown macro '\bibcitet'
prepare_Rd: ./man/Survreg.Rd:67: unknown macro '\bibcitet'
prepare_Rd: ./man/Survreg.Rd:68: unknown macro '\bibcitet'
checkRd: (-1) Survreg.Rd:66: Lost braces
66 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017},
| ^
checkRd: (-1) Survreg.Rd:67: Lost braces
67 | \bibcitet{tram::Siegfried:Tamasi:Hothorn:2026}, and
| ^
checkRd: (-1) Survreg.Rd:68: Lost braces
68 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/mmlt.Rd:29: unknown macro '\bibcitet'
prepare_Rd: ./man/mmlt.Rd:31: unknown macro '\bibcitet'
prepare_Rd: ./man/mmlt.Rd:59: unknown macro '\bibcitet'
checkRd: (-1) mmlt.Rd:29: Lost braces
29 | described by \bibcitet{tram::Klein:Hothorn:Barbanti:2020}. If \code{FALSE}, parameters can be
| ^
checkRd: (-1) mmlt.Rd:31: Lost braces
31 | \bibcitet{tram::Klein:Hothorn:Barbanti:2020}. Using \code{conditional = FALSE} with probit-only models
| ^
checkRd: (-1) mmlt.Rd:59: Lost braces
59 | as described by \bibcitet{tram::Klein:Hothorn:Barbanti:2020}.
| ^
prepare_Rd: ./man/mtram.Rd:43: unknown macro '\bibcitet'
checkRd: (-1) mtram.Rd:43: Lost braces
43 | \bibcitet{tram::Barbanti:Hothorn:2023} and examples are given in the \code{mtram} package vignette.
| ^
prepare_Rd: ./man/robust_score_test.Rd:60: unknown macro '\bibcitet'
checkRd: (-1) robust_score_test.Rd:60: Lost braces
60 | see \bibcitet{tram::Kook:Saengkyongam:Lundborg:2024}.
| ^
prepare_Rd: ./man/score_test.Rd:45: unknown macro '\bibcitet'
checkRd: (-1) score_test.Rd:45: Lost braces
45 | Model scores are available from \bibcitet{tram::Hothorn:Moest:Buehlmann:2017}.
| ^
prepare_Rd: ./man/tram-methods.Rd:161: unknown macro '\bibcitet'
checkRd: (-1) tram-methods.Rd:161: Lost braces
161 | \bibcitet{tram::Sewak:Hothorn:2023}.
| ^
prepare_Rd: ./man/tram.Rd:156: unknown macro '\bibcitet'
prepare_Rd: ./man/tram.Rd:158: unknown macro '\bibcitet'
prepare_Rd: ./man/tram.Rd:159: unknown macro '\bibcitet'
checkRd: (-1) tram.Rd:156: Lost braces
156 | is presented in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017}, computational
| ^
checkRd: (-1) tram.Rd:158: Lost braces
158 | are discussed by \bibcitet{Hothorn:2018}. Location-scale transformation
| ^
checkRd: (-1) tram.Rd:159: Lost braces
159 | models have been introduced by \bibcitet{tram::Siegfried:Kook:Hothorn:2023}.
| ^
Flavor: r-release-linux-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14